11 items (Aspergillus welwitschiae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A3F3PMZ6	Ribosomal protein S5 domain 2-type protein. (403 aa)
	A0A3F3PPL8	Uncharacterized protein. (249 aa)
	A0A3F3PHN1	IEC3 subunit of the Ino80 complex, chromatin re-modelling-domain-containing protein. (739 aa)
	A0A3F3PXA3	Sas10/Utp3/C1D family-domain-containing protein. (224 aa)
	USB1	U6 snRNA phosphodiesterase; Phosphodiesterase responsible for the U6 snRNA 3' end processing. Acts as an exoribonuclease (RNase) responsible for trimming the poly(U) tract of the last nucleotides in the pre-U6 snRNA molecule, leading to the formation of mature U6 snRNA; Belongs to the 2H phosphoesterase superfamily. USB1 family. (300 aa)
	A0A3F3PZ81	Ribosomal protein S5 domain 2-type protein. (385 aa)
	A0A3F3Q073	Ribonuclease III domain-containing protein. (359 aa)
	A0A3F3Q8C3	Ribosomal protein S5 domain 2-type protein. (292 aa)
	A0A3F3QE81	Exonuclease domain-containing protein. (802 aa)
	A0A3F3QJ76	Uncharacterized protein. (279 aa)
	A0A3F3QJY0	3' exoribonuclease family, domain 1-domain-containing protein. (269 aa)

Your Current Organism:

Aspergillus welwitschiae

NCBI taxonomy Id: 1341132
Other names: A. welwitschiae, Aspergillus welwitschiae (Bres.) Henn., CBS 139.54, Ustilago welwitschiae

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A3F3PHN1	A0A3F3PMZ6	IEC3 subunit of the Ino80 complex, chromatin re-modelling-domain-containing protein.	Ribosomal protein S5 domain 2-type protein.	0.998
A0A3F3PHN1	A0A3F3PPL8	IEC3 subunit of the Ino80 complex, chromatin re-modelling-domain-containing protein.	Uncharacterized protein.	0.998
A0A3F3PHN1	A0A3F3PXA3	IEC3 subunit of the Ino80 complex, chromatin re-modelling-domain-containing protein.	Sas10/Utp3/C1D family-domain-containing protein.	0.995
A0A3F3PHN1	A0A3F3PZ81	IEC3 subunit of the Ino80 complex, chromatin re-modelling-domain-containing protein.	Ribosomal protein S5 domain 2-type protein.	0.999
A0A3F3PHN1	A0A3F3Q8C3	IEC3 subunit of the Ino80 complex, chromatin re-modelling-domain-containing protein.	Ribosomal protein S5 domain 2-type protein.	0.999
A0A3F3PHN1	A0A3F3QJ76	IEC3 subunit of the Ino80 complex, chromatin re-modelling-domain-containing protein.	Uncharacterized protein.	0.999
A0A3F3PHN1	A0A3F3QJY0	IEC3 subunit of the Ino80 complex, chromatin re-modelling-domain-containing protein.	3' exoribonuclease family, domain 1-domain-containing protein.	0.999
A0A3F3PMZ6	A0A3F3PHN1	Ribosomal protein S5 domain 2-type protein.	IEC3 subunit of the Ino80 complex, chromatin re-modelling-domain-containing protein.	0.998
A0A3F3PMZ6	A0A3F3PPL8	Ribosomal protein S5 domain 2-type protein.	Uncharacterized protein.	0.998
A0A3F3PMZ6	A0A3F3PXA3	Ribosomal protein S5 domain 2-type protein.	Sas10/Utp3/C1D family-domain-containing protein.	0.995
A0A3F3PMZ6	A0A3F3PZ81	Ribosomal protein S5 domain 2-type protein.	Ribosomal protein S5 domain 2-type protein.	0.998
A0A3F3PMZ6	A0A3F3Q8C3	Ribosomal protein S5 domain 2-type protein.	Ribosomal protein S5 domain 2-type protein.	0.999
A0A3F3PMZ6	A0A3F3QJ76	Ribosomal protein S5 domain 2-type protein.	Uncharacterized protein.	0.999
A0A3F3PMZ6	A0A3F3QJY0	Ribosomal protein S5 domain 2-type protein.	3' exoribonuclease family, domain 1-domain-containing protein.	0.999
A0A3F3PPL8	A0A3F3PHN1	Uncharacterized protein.	IEC3 subunit of the Ino80 complex, chromatin re-modelling-domain-containing protein.	0.998
A0A3F3PPL8	A0A3F3PMZ6	Uncharacterized protein.	Ribosomal protein S5 domain 2-type protein.	0.998
A0A3F3PPL8	A0A3F3PXA3	Uncharacterized protein.	Sas10/Utp3/C1D family-domain-containing protein.	0.995
A0A3F3PPL8	A0A3F3PZ81	Uncharacterized protein.	Ribosomal protein S5 domain 2-type protein.	0.999
A0A3F3PPL8	A0A3F3Q8C3	Uncharacterized protein.	Ribosomal protein S5 domain 2-type protein.	0.998
A0A3F3PPL8	A0A3F3QE81	Uncharacterized protein.	Exonuclease domain-containing protein.	0.467