30 items (Aspergillus welwitschiae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A3F3Q188	Eukaryotic rRNA processing protein EBP2-domain-containing protein. (362 aa)
	A0A3F3PYA2	Ribosome biogenesis protein Ssf2. (458 aa)
	A0A3F3PXW0	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily. (655 aa)
	A0A3F3PXN7	Midasin; Nuclear chaperone required for maturation and nuclear export of pre-60S ribosome subunits; Belongs to the midasin family. (4913 aa)
	A0A3F3PXC0	C2H2-type domain-containing protein. (113 aa)
	A0A3F3PSQ7	ATP-dependent RNA helicase dbp3; Belongs to the DEAD box helicase family. (495 aa)
	A0A3F3PRZ8	Ribosomal protein S8e/ribosomal biogenesis NSA2. (261 aa)
	A0A3F3PRC7	P-loop containing nucleoside triphosphate hydrolase protein. (736 aa)
	ERB1	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (787 aa)
	A0A3F3PPX9	Ribosome biogenesis protein Nop16. (239 aa)
	A0A3F3PNH0	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family. (212 aa)
	YTM1	Ribosome biogenesis protein YTM1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (490 aa)
	A0A3F3Q2C0	Ribosome assembly protein Noc2. (790 aa)
	A0A3F3Q078	Rrp15p-domain-containing protein. (291 aa)
	A0A3F3QJT2	Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily. (560 aa)
	NOP7	Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (672 aa)
	A0A3F3QIZ8	Armadillo-type protein. (701 aa)
	A0A3F3QHW2	P-loop containing nucleoside triphosphate hydrolase protein. (538 aa)
	A0A3F3QHV5	Nucleolar protein,Nop52-domain-containing protein. (317 aa)
	A0A3F3QFE4	Las1-like-domain-containing protein. (404 aa)
	A0A3F3QEX3	Uncharacterized protein. (404 aa)
	A0A3F3QEA2	Brix domain-domain-containing protein. (358 aa)
	A0A3F3QDU2	Protein MAK16; Belongs to the MAK16 family. (329 aa)
	A0A3F3QD80	Uncharacterized protein. (359 aa)
	A0A3F3Q828	Anticodon-binding protein. (442 aa)
	TIF6	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export; Belongs to the eIF-6 family. (247 aa)
	SPB1	AdoMet-dependent rRNA methyltransferase SPB1; Required for proper assembly of pre-ribosomal particles during the biogenesis of the 60S ribosomal subunit; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily. (794 aa)
	A0A3F3Q5Q8	Nucleolar complex-associated protein 3; Required for synthesis of 60S ribosomal subunits and the transport of pre-ribosomes from the nucleoplasm to the cytoplasm. Belongs to the CBF/MAK21 family. (687 aa)
	A0A3F3Q5G4	RNA helicase. (642 aa)
	A0A3F3Q4L6	60S ribosome subunit biogenesis protein NIP7; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family. (188 aa)

Your Current Organism:

Aspergillus welwitschiae

NCBI taxonomy Id: 1341132
Other names: A. welwitschiae, Aspergillus welwitschiae (Bres.) Henn., CBS 139.54, Ustilago welwitschiae

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A3F3PNH0	A0A3F3PPX9	A0A3F3PNH0	A0A3F3PPX9	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.	Ribosome biogenesis protein Nop16.	0.819
A0A3F3PNH0	A0A3F3PRZ8	A0A3F3PNH0	A0A3F3PRZ8	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.	Ribosomal protein S8e/ribosomal biogenesis NSA2.	0.967
A0A3F3PNH0	A0A3F3PSQ7	A0A3F3PNH0	A0A3F3PSQ7	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.	ATP-dependent RNA helicase dbp3; Belongs to the DEAD box helicase family.	0.893
A0A3F3PNH0	A0A3F3PXC0	A0A3F3PNH0	A0A3F3PXC0	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.	C2H2-type domain-containing protein.	0.936
A0A3F3PNH0	A0A3F3PXW0	A0A3F3PNH0	A0A3F3PXW0	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	0.984
A0A3F3PNH0	A0A3F3PYA2	A0A3F3PNH0	A0A3F3PYA2	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.	Ribosome biogenesis protein Ssf2.	0.891
A0A3F3PNH0	A0A3F3Q078	A0A3F3PNH0	A0A3F3Q078	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.	Rrp15p-domain-containing protein.	0.875
A0A3F3PNH0	A0A3F3Q188	A0A3F3PNH0	A0A3F3Q188	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.	Eukaryotic rRNA processing protein EBP2-domain-containing protein.	0.988
A0A3F3PNH0	A0A3F3Q2C0	A0A3F3PNH0	A0A3F3Q2C0	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.	Ribosome assembly protein Noc2.	0.945
A0A3F3PNH0	A0A3F3Q4L6	A0A3F3PNH0	A0A3F3Q4L6	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.	60S ribosome subunit biogenesis protein NIP7; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family.	0.948
A0A3F3PNH0	A0A3F3Q5G4	A0A3F3PNH0	A0A3F3Q5G4	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.	RNA helicase.	0.794
A0A3F3PNH0	A0A3F3Q5Q8	A0A3F3PNH0	A0A3F3Q5Q8	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.	Nucleolar complex-associated protein 3; Required for synthesis of 60S ribosomal subunits and the transport of pre-ribosomes from the nucleoplasm to the cytoplasm. Belongs to the CBF/MAK21 family.	0.925
A0A3F3PNH0	A0A3F3Q828	A0A3F3PNH0	A0A3F3Q828	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.	Anticodon-binding protein.	0.883
A0A3F3PNH0	A0A3F3QD80	A0A3F3PNH0	A0A3F3QD80	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.	Uncharacterized protein.	0.912
A0A3F3PNH0	A0A3F3QDU2	A0A3F3PNH0	A0A3F3QDU2	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.	Protein MAK16; Belongs to the MAK16 family.	0.876
A0A3F3PNH0	A0A3F3QEA2	A0A3F3PNH0	A0A3F3QEA2	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.	Brix domain-domain-containing protein.	0.912
A0A3F3PNH0	A0A3F3QHV5	A0A3F3PNH0	A0A3F3QHV5	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.	Nucleolar protein,Nop52-domain-containing protein.	0.928
A0A3F3PNH0	A0A3F3QHW2	A0A3F3PNH0	A0A3F3QHW2	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.	P-loop containing nucleoside triphosphate hydrolase protein.	0.960
A0A3F3PNH0	A0A3F3QIZ8	A0A3F3PNH0	A0A3F3QIZ8	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.	Armadillo-type protein.	0.952
A0A3F3PNH0	A0A3F3QJT2	A0A3F3PNH0	A0A3F3QJT2	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.	Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily.	0.983