39 items (Aspergillus welwitschiae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A3F3PTK8	Nop53-domain-containing protein. (730 aa)
	A0A3F3PIG5	Uncharacterized protein. (129 aa)
	A0A3F3PJV1	Ribosomal protein S19e. (147 aa)
	A0A3F3PK28	ANK_REP_REGION domain-containing protein. (163 aa)
	A0A3F3PMB0	Uncharacterized protein. (114 aa)
	A0A3F3PMJ5	Uncharacterized protein. (371 aa)
	A0A3F3PMU9	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10. (312 aa)
	A0A3F3PNK8	Ribosomal protein S28e. (68 aa)
	A0A3F3PQV8	Uncharacterized protein. (235 aa)
	A0A3F3PU97	Ribosomal protein S11-domain-containing protein; Belongs to the universal ribosomal protein uS11 family. (150 aa)
	A0A3F3PW25	Uncharacterized protein. (1821 aa)
	A0A3F3PWM6	40S ribosomal protein S27. (82 aa)
	A0A3F3PXN7	Midasin; Nuclear chaperone required for maturation and nuclear export of pre-60S ribosome subunits; Belongs to the midasin family. (4913 aa)
	A0A3F3PY85	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family. (94 aa)
	A0A3F3PYA2	Ribosome biogenesis protein Ssf2. (458 aa)
	A0A3F3Q0P7	WD40 repeat-like protein. (903 aa)
	A0A3F3Q1U6	Uncharacterized protein. (825 aa)
	A0A3F3Q2D3	Ribosomal protein S7 domain-containing protein; Belongs to the universal ribosomal protein uS7 family. (215 aa)
	RPS0	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. (298 aa)
	A0A3F3Q4L6	60S ribosome subunit biogenesis protein NIP7; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family. (188 aa)
	A0A3F3Q583	Ribosomal protein S19-domain-containing protein; Belongs to the universal ribosomal protein uS19 family. (153 aa)
	A0A3F3Q5G4	RNA helicase. (642 aa)
	A0A3F3Q606	Mitochondrial glyco protein. (310 aa)
	A0A3F3Q7N1	CP-type G domain-containing protein. (664 aa)
	TIF6	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export; Belongs to the eIF-6 family. (247 aa)
	A0A3F3Q853	Ribosomal protein L23/L15e core domain-containing protein. (154 aa)
	A0A3F3Q8E6	Domain found in IF2B/IF5-domain-containing protein. (425 aa)
	A0A3F3Q9H8	Ribosomal protein L10e/L16. (223 aa)
	A0A3F3QAD2	Ribosomal RNA-processing protein 7-domain-containing protein. (306 aa)
	A0A3F3QC62	Uncharacterized protein. (114 aa)
	A0A3F3QD80	Uncharacterized protein. (359 aa)
	A0A3F3QD81	WD40-repeat-containing domain protein. (517 aa)
	A0A3F3QEA2	Brix domain-domain-containing protein. (358 aa)
	A0A3F3QF90	P-loop containing nucleoside triphosphate hydrolase protein. (1070 aa)
	A0A3F3QFX6	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes. (246 aa)
	A0A3F3QGE5	SBDS protein C-terminal domain-domain-containing protein. (343 aa)
	A0A3F3QH60	60S ribosomal protein L5. (531 aa)
	A0A3F3QI19	Ribosomal protein L6e-domain-containing protein. (202 aa)
	A0A3F3QJA2	Ribosomal protein L22/L17; Belongs to the universal ribosomal protein uL22 family. (360 aa)

Your Current Organism:

Aspergillus welwitschiae

NCBI taxonomy Id: 1341132
Other names: A. welwitschiae, Aspergillus welwitschiae (Bres.) Henn., CBS 139.54, Ustilago welwitschiae

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A3F3PIG5	A0A3F3PMU9	A0A3F3PIG5	A0A3F3PMU9	Uncharacterized protein.	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	0.964
A0A3F3PIG5	A0A3F3PNK8	A0A3F3PIG5	A0A3F3PNK8	Uncharacterized protein.	Ribosomal protein S28e.	0.966
A0A3F3PIG5	A0A3F3PQV8	A0A3F3PIG5	A0A3F3PQV8	Uncharacterized protein.	Uncharacterized protein.	0.962
A0A3F3PIG5	A0A3F3PU97	A0A3F3PIG5	A0A3F3PU97	Uncharacterized protein.	Ribosomal protein S11-domain-containing protein; Belongs to the universal ribosomal protein uS11 family.	0.987
A0A3F3PIG5	A0A3F3PW25	A0A3F3PIG5	A0A3F3PW25	Uncharacterized protein.	Uncharacterized protein.	0.628
A0A3F3PIG5	A0A3F3PWM6	A0A3F3PIG5	A0A3F3PWM6	Uncharacterized protein.	40S ribosomal protein S27.	0.986
A0A3F3PIG5	A0A3F3Q0P7	A0A3F3PIG5	A0A3F3Q0P7	Uncharacterized protein.	WD40 repeat-like protein.	0.797
A0A3F3PIG5	A0A3F3Q2D3	A0A3F3PIG5	A0A3F3Q2D3	Uncharacterized protein.	Ribosomal protein S7 domain-containing protein; Belongs to the universal ribosomal protein uS7 family.	0.988
A0A3F3PIG5	A0A3F3Q583	A0A3F3PIG5	A0A3F3Q583	Uncharacterized protein.	Ribosomal protein S19-domain-containing protein; Belongs to the universal ribosomal protein uS19 family.	0.988
A0A3F3PIG5	A0A3F3Q853	A0A3F3PIG5	A0A3F3Q853	Uncharacterized protein.	Ribosomal protein L23/L15e core domain-containing protein.	0.968
A0A3F3PIG5	A0A3F3Q8E6	A0A3F3PIG5	A0A3F3Q8E6	Uncharacterized protein.	Domain found in IF2B/IF5-domain-containing protein.	0.895
A0A3F3PIG5	A0A3F3Q9H8	A0A3F3PIG5	A0A3F3Q9H8	Uncharacterized protein.	Ribosomal protein L10e/L16.	0.962
A0A3F3PIG5	A0A3F3QAD2	A0A3F3PIG5	A0A3F3QAD2	Uncharacterized protein.	Ribosomal RNA-processing protein 7-domain-containing protein.	0.782
A0A3F3PIG5	A0A3F3QF90	A0A3F3PIG5	A0A3F3QF90	Uncharacterized protein.	P-loop containing nucleoside triphosphate hydrolase protein.	0.820
A0A3F3PIG5	A0A3F3QFX6	A0A3F3PIG5	A0A3F3QFX6	Uncharacterized protein.	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	0.903
A0A3F3PIG5	A0A3F3QGE5	A0A3F3PIG5	A0A3F3QGE5	Uncharacterized protein.	SBDS protein C-terminal domain-domain-containing protein.	0.757
A0A3F3PIG5	A0A3F3QH60	A0A3F3PIG5	A0A3F3QH60	Uncharacterized protein.	60S ribosomal protein L5.	0.968
A0A3F3PIG5	A0A3F3QI19	A0A3F3PIG5	A0A3F3QI19	Uncharacterized protein.	Ribosomal protein L6e-domain-containing protein.	0.968
A0A3F3PIG5	A0A3F3QJA2	A0A3F3PIG5	A0A3F3QJA2	Uncharacterized protein.	Ribosomal protein L22/L17; Belongs to the universal ribosomal protein uL22 family.	0.911
A0A3F3PIG5	RPS0	A0A3F3PIG5	A0A3F3Q417	Uncharacterized protein.	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	0.987