21 items (Aspergillus welwitschiae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A3F3PHN1	IEC3 subunit of the Ino80 complex, chromatin re-modelling-domain-containing protein. (739 aa)
	A0A3F3PLW9	Uncharacterized protein. (341 aa)
	A0A3F3PMY7	Ribonucleases P/MRP protein subunit POP1-domain-containing protein. (876 aa)
	A0A3F3PPL8	Uncharacterized protein. (249 aa)
	A0A3F3PT14	Uncharacterized protein. (99 aa)
	A0A3F3PV61	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. (602 aa)
	A0A3F3PXA3	Sas10/Utp3/C1D family-domain-containing protein. (224 aa)
	A0A3F3Q073	Ribonuclease III domain-containing protein. (359 aa)
	A0A3F3Q0A0	Uncharacterized protein. (739 aa)
	A0A3F3Q258	Fibrillarin-domain-containing protein. (313 aa)
	A0A3F3Q5H5	Nucleolar protein 58. (580 aa)
	A0A3F3Q5V3	HAD_SAK_1 domain-containing protein. (565 aa)
	A0A3F3Q658	Exosome complex exonuclease Rrp6. (782 aa)
	A0A3F3Q923	Centromere/microtubule-binding protein cbf5. (485 aa)
	A0A3F3QCG5	Beta-lactamase-like protein. (926 aa)
	A0A3F3QD17	Rpp14/Pop5 family-domain-containing protein. (207 aa)
	A0A3F3QJ76	Uncharacterized protein. (279 aa)
	A0A3F3QJ96	Rpp20 subunit of nuclear RNase MRP and P-domain-containing protein. (225 aa)
	A0A3F3QJF1	RNA polymerase II transcription elongation factor Rtf1p. (606 aa)
	A0A3F3QJN6	zf-C3H1 domain-containing protein. (1113 aa)
	A0A3F3QJY0	3' exoribonuclease family, domain 1-domain-containing protein. (269 aa)

Your Current Organism:

Aspergillus welwitschiae

NCBI taxonomy Id: 1341132
Other names: A. welwitschiae, Aspergillus welwitschiae (Bres.) Henn., CBS 139.54, Ustilago welwitschiae

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A3F3PHN1	A0A3F3PPL8	IEC3 subunit of the Ino80 complex, chromatin re-modelling-domain-containing protein.	Uncharacterized protein.	0.998
A0A3F3PHN1	A0A3F3PXA3	IEC3 subunit of the Ino80 complex, chromatin re-modelling-domain-containing protein.	Sas10/Utp3/C1D family-domain-containing protein.	0.995
A0A3F3PHN1	A0A3F3Q0A0	IEC3 subunit of the Ino80 complex, chromatin re-modelling-domain-containing protein.	Uncharacterized protein.	0.497
A0A3F3PHN1	A0A3F3Q258	IEC3 subunit of the Ino80 complex, chromatin re-modelling-domain-containing protein.	Fibrillarin-domain-containing protein.	0.872
A0A3F3PHN1	A0A3F3Q5H5	IEC3 subunit of the Ino80 complex, chromatin re-modelling-domain-containing protein.	Nucleolar protein 58.	0.900
A0A3F3PHN1	A0A3F3Q658	IEC3 subunit of the Ino80 complex, chromatin re-modelling-domain-containing protein.	Exosome complex exonuclease Rrp6.	0.471
A0A3F3PHN1	A0A3F3QJ76	IEC3 subunit of the Ino80 complex, chromatin re-modelling-domain-containing protein.	Uncharacterized protein.	0.999
A0A3F3PHN1	A0A3F3QJY0	IEC3 subunit of the Ino80 complex, chromatin re-modelling-domain-containing protein.	3' exoribonuclease family, domain 1-domain-containing protein.	0.999
A0A3F3PMY7	A0A3F3PT14	Ribonucleases P/MRP protein subunit POP1-domain-containing protein.	Uncharacterized protein.	0.969
A0A3F3PMY7	A0A3F3QD17	Ribonucleases P/MRP protein subunit POP1-domain-containing protein.	Rpp14/Pop5 family-domain-containing protein.	0.998
A0A3F3PMY7	A0A3F3QJ96	Ribonucleases P/MRP protein subunit POP1-domain-containing protein.	Rpp20 subunit of nuclear RNase MRP and P-domain-containing protein.	0.998
A0A3F3PPL8	A0A3F3PHN1	Uncharacterized protein.	IEC3 subunit of the Ino80 complex, chromatin re-modelling-domain-containing protein.	0.998
A0A3F3PPL8	A0A3F3PXA3	Uncharacterized protein.	Sas10/Utp3/C1D family-domain-containing protein.	0.995
A0A3F3PPL8	A0A3F3Q258	Uncharacterized protein.	Fibrillarin-domain-containing protein.	0.877
A0A3F3PPL8	A0A3F3Q5H5	Uncharacterized protein.	Nucleolar protein 58.	0.893
A0A3F3PPL8	A0A3F3QJ76	Uncharacterized protein.	Uncharacterized protein.	0.998
A0A3F3PPL8	A0A3F3QJN6	Uncharacterized protein.	zf-C3H1 domain-containing protein.	0.436
A0A3F3PPL8	A0A3F3QJY0	Uncharacterized protein.	3' exoribonuclease family, domain 1-domain-containing protein.	0.998
A0A3F3PT14	A0A3F3PMY7	Uncharacterized protein.	Ribonucleases P/MRP protein subunit POP1-domain-containing protein.	0.969
A0A3F3PT14	A0A3F3QD17	Uncharacterized protein.	Rpp14/Pop5 family-domain-containing protein.	0.968