(21 nodes) Establishment of chromosome localization network (Aspergillus welwitschiae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BDQ94DRAFT_283	Kinetochore CENP-C fungal-like protein. (631 aa)
	A0A3F3QIV4	Spc7-domain-containing protein. (1542 aa)
	A0A3F3PL38	Kinase-like domain-containing protein. (491 aa)
	A0A3F3PMH4	Central kinetochore-associated-domain-containing protein. (577 aa)
	A0A3F3PP06	Uncharacterized protein. (275 aa)
	A0A3F3PQW7	Solid-state culture specific protein. (487 aa)
	A0A3F3PTE4	Uncharacterized protein. (328 aa)
	A0A3F3PXD5	DASH complex subunit Dam1-domain-containing protein. (203 aa)
	A0A3F3PY58	Apses transcription factor. (431 aa)
	A0A3F3PZ83	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (788 aa)
	A0A3F3Q041	Spindle pole body component. (948 aa)
	A0A3F3Q0B9	Nnf1-domain-containing protein. (223 aa)
	A0A3F3Q4H1	Phosphatases II. (607 aa)
	A0A3F3Q4Q7	Kinesin family protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (733 aa)
	A0A3F3Q5M7	Uncharacterized protein. (444 aa)
	A0A3F3Q623	HEC/Ndc80p family-domain-containing protein. (746 aa)
	A0A3F3Q8M9	NUDE protein. (605 aa)
	A0A3F3Q9I5	NAD(P)-binding protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (262 aa)
	A0A3F3PKC4	Chromosome segregation protein Csm1/Pcs1-domain-containing protein. (520 aa)
	A0A3F3QF34	SUN domain-containing protein. (809 aa)
	A0A3F3QFI6	Pkinase-domain-containing protein. (1141 aa)

Your Current Organism:

Aspergillus welwitschiae

NCBI taxonomy Id: 1341132
Other names: A. welwitschiae, Aspergillus welwitschiae (Bres.) Henn., CBS 139.54, Ustilago welwitschiae

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A3F3PKC4	A0A3F3Q4H1	A0A3F3PKC4	A0A3F3Q4H1	Chromosome segregation protein Csm1/Pcs1-domain-containing protein.	Phosphatases II.	0.663
A0A3F3PKC4	A0A3F3QF34	A0A3F3PKC4	A0A3F3QF34	Chromosome segregation protein Csm1/Pcs1-domain-containing protein.	SUN domain-containing protein.	0.439
A0A3F3PKC4	BDQ94DRAFT_283	A0A3F3PKC4	A0A3F3QIQ7	Chromosome segregation protein Csm1/Pcs1-domain-containing protein.	Kinetochore CENP-C fungal-like protein.	0.413
A0A3F3PL38	A0A3F3Q4H1	A0A3F3PL38	A0A3F3Q4H1	Kinase-like domain-containing protein.	Phosphatases II.	0.509
A0A3F3PL38	A0A3F3Q623	A0A3F3PL38	A0A3F3Q623	Kinase-like domain-containing protein.	HEC/Ndc80p family-domain-containing protein.	0.520
A0A3F3PL38	A0A3F3QFI6	A0A3F3PL38	A0A3F3QFI6	Kinase-like domain-containing protein.	Pkinase-domain-containing protein.	0.770
A0A3F3PMH4	A0A3F3QFI6	A0A3F3PMH4	A0A3F3QFI6	Central kinetochore-associated-domain-containing protein.	Pkinase-domain-containing protein.	0.419
A0A3F3PP06	A0A3F3Q4Q7	A0A3F3PP06	A0A3F3Q4Q7	Uncharacterized protein.	Kinesin family protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.761
A0A3F3PP06	A0A3F3Q623	A0A3F3PP06	A0A3F3Q623	Uncharacterized protein.	HEC/Ndc80p family-domain-containing protein.	0.545
A0A3F3PP06	A0A3F3QFI6	A0A3F3PP06	A0A3F3QFI6	Uncharacterized protein.	Pkinase-domain-containing protein.	0.416
A0A3F3PXD5	A0A3F3Q041	A0A3F3PXD5	A0A3F3Q041	DASH complex subunit Dam1-domain-containing protein.	Spindle pole body component.	0.849
A0A3F3PXD5	A0A3F3Q623	A0A3F3PXD5	A0A3F3Q623	DASH complex subunit Dam1-domain-containing protein.	HEC/Ndc80p family-domain-containing protein.	0.796
A0A3F3PY58	A0A3F3QF34	A0A3F3PY58	A0A3F3QF34	Apses transcription factor.	SUN domain-containing protein.	0.859
A0A3F3PZ83	A0A3F3Q4Q7	A0A3F3PZ83	A0A3F3Q4Q7	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Kinesin family protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.761
A0A3F3PZ83	A0A3F3Q623	A0A3F3PZ83	A0A3F3Q623	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	HEC/Ndc80p family-domain-containing protein.	0.545
A0A3F3PZ83	A0A3F3QFI6	A0A3F3PZ83	A0A3F3QFI6	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Pkinase-domain-containing protein.	0.416
A0A3F3Q041	A0A3F3PXD5	A0A3F3Q041	A0A3F3PXD5	Spindle pole body component.	DASH complex subunit Dam1-domain-containing protein.	0.849
A0A3F3Q041	A0A3F3Q623	A0A3F3Q041	A0A3F3Q623	Spindle pole body component.	HEC/Ndc80p family-domain-containing protein.	0.662
A0A3F3Q041	A0A3F3QIV4	A0A3F3Q041	A0A3F3QIV4	Spindle pole body component.	Spc7-domain-containing protein.	0.414
A0A3F3Q4H1	A0A3F3PKC4	A0A3F3Q4H1	A0A3F3PKC4	Phosphatases II.	Chromosome segregation protein Csm1/Pcs1-domain-containing protein.	0.663