39 items (Aspergillus welwitschiae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A3F3QEJ5	DNA directed RNA polymerase. (74 aa)
	A0A3F3QK24	Cyclin-like protein; Belongs to the cyclin family. (380 aa)
	A0A3F3QL33	Uncharacterized protein. (629 aa)
	A0A3F3QLI4	CDK-activating kinase assembly factor MAT1-domain-containing protein. (384 aa)
	A0A3F3PZ53	Uncharacterized protein. (707 aa)
	A0A3F3PV82	Uncharacterized protein. (387 aa)
	A0A3F3PTK6	DNA-directed RNA polymerase subunit E. (169 aa)
	A0A3F3PTH4	Uncharacterized protein. (498 aa)
	A0A3F3PTB2	Transcription initiation factor IIF, beta subunit-domain-containing protein. (383 aa)
	A0A3F3PRR7	Transcription factor S-II, central domain-domain-containing protein. (431 aa)
	A0A3F3PNE2	DNA-directed RNA polymerase. (157 aa)
	A0A3F3PNC9	RNA polymerase, subunit omega/K/RPB6. (160 aa)
	A0A3F3PNC7	Kinase-like domain-containing protein; Belongs to the protein kinase superfamily. (406 aa)
	A0A3F3PL95	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (478 aa)
	A0A3F3PKY7	Protein kinase domain-containing protein. (350 aa)
	A0A3F3PKL1	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (709 aa)
	A0A3F3PHD9	SPT16-domain-containing protein. (1020 aa)
	A0A3F3PZ59	DNA-directed RNA polymerase. (338 aa)
	A0A3F3PZL3	TFIIH subunit TTDA/Tfb5. (72 aa)
	A0A3F3Q084	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family. (457 aa)
	A0A3F3Q0N8	Protein kinase domain-containing protein. (1067 aa)
	A0A3F3Q0P4	DNA repair helicase rad25. (818 aa)
	A0A3F3Q1A1	Uncharacterized protein. (110 aa)
	A0A3F3Q211	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1747 aa)
	A0A3F3Q2E3	RNA polymerase. (235 aa)
	A0A3F3Q3E2	FACT complex subunit POB3; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment of [...] (656 aa)
	A0A3F3Q3J3	RNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II. (824 aa)
	A0A3F3Q5R8	Cyclin-like protein; Belongs to the cyclin family. (507 aa)
	A0A3F3Q6P2	Transcription factor TFIIH complex subunit. (379 aa)
	A0A3F3Q7L4	Transcription elongation factor SPT4; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene. (120 aa)
	A0A3F3Q8I4	RPOL9 domain-containing protein. (122 aa)
	A0A3F3Q8I9	Cyclin Ccl1; Belongs to the cyclin family. (427 aa)
	A0A3F3Q8V0	RNA polymerase II transcription factor SIII subunit A-domain-containing protein. (359 aa)
	A0A3F3Q8V7	DNA-directed RNA polymerase, subunit N/Rpb10. (74 aa)
	A0A3F3Q943	Kinase-like domain-containing protein. (553 aa)
	A0A3F3Q9D9	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1829 aa)
	A0A3F3QAX6	Transcription factor S-II, central domain-domain-containing protein. (940 aa)
	A0A3F3QCC2	BTB/POZ protein; Belongs to the SKP1 family. (105 aa)
	A0A3F3QHB8	Helicase ATP-binding domain-containing protein. (801 aa)

Your Current Organism:

Aspergillus welwitschiae

NCBI taxonomy Id: 1341132
Other names: A. welwitschiae, Aspergillus welwitschiae (Bres.) Henn., CBS 139.54, Ustilago welwitschiae

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A3F3PHD9	A0A3F3PKL1	SPT16-domain-containing protein.	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	0.713
A0A3F3PHD9	A0A3F3PKY7	SPT16-domain-containing protein.	Protein kinase domain-containing protein.	0.711
A0A3F3PHD9	A0A3F3PL95	SPT16-domain-containing protein.	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	0.735
A0A3F3PHD9	A0A3F3PNC7	SPT16-domain-containing protein.	Kinase-like domain-containing protein; Belongs to the protein kinase superfamily.	0.699
A0A3F3PHD9	A0A3F3PNC9	SPT16-domain-containing protein.	RNA polymerase, subunit omega/K/RPB6.	0.965
A0A3F3PHD9	A0A3F3PNE2	SPT16-domain-containing protein.	DNA-directed RNA polymerase.	0.965
A0A3F3PHD9	A0A3F3PRR7	SPT16-domain-containing protein.	Transcription factor S-II, central domain-domain-containing protein.	0.919
A0A3F3PHD9	A0A3F3PTB2	SPT16-domain-containing protein.	Transcription initiation factor IIF, beta subunit-domain-containing protein.	0.679
A0A3F3PHD9	A0A3F3PTH4	SPT16-domain-containing protein.	Uncharacterized protein.	0.925
A0A3F3PHD9	A0A3F3PTK6	SPT16-domain-containing protein.	DNA-directed RNA polymerase subunit E.	0.974
A0A3F3PHD9	A0A3F3PV82	SPT16-domain-containing protein.	Uncharacterized protein.	0.711
A0A3F3PHD9	A0A3F3PZ53	SPT16-domain-containing protein.	Uncharacterized protein.	0.678
A0A3F3PHD9	A0A3F3PZ59	SPT16-domain-containing protein.	DNA-directed RNA polymerase.	0.983
A0A3F3PHD9	A0A3F3Q0N8	SPT16-domain-containing protein.	Protein kinase domain-containing protein.	0.743
A0A3F3PHD9	A0A3F3Q1A1	SPT16-domain-containing protein.	Uncharacterized protein.	0.965
A0A3F3PHD9	A0A3F3Q211	SPT16-domain-containing protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.983
A0A3F3PHD9	A0A3F3Q2E3	SPT16-domain-containing protein.	RNA polymerase.	0.967
A0A3F3PHD9	A0A3F3Q3E2	SPT16-domain-containing protein.	FACT complex subunit POB3; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment of [...]	0.998
A0A3F3PHD9	A0A3F3Q3J3	SPT16-domain-containing protein.	RNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II.	0.749
A0A3F3PHD9	A0A3F3Q5R8	SPT16-domain-containing protein.	Cyclin-like protein; Belongs to the cyclin family.	0.737