30 items (Aspergillus welwitschiae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A3F3PL95	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (478 aa)
	A0A3F3PL90	Histone H2B; Belongs to the histone H2B family. (140 aa)
	A0A3F3PKB4	DNA-directed RNA polymerase. (373 aa)
	A0A3F3QL33	Uncharacterized protein. (629 aa)
	A0A3F3QIK2	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1680 aa)
	A0A3F3QHB8	Helicase ATP-binding domain-containing protein. (801 aa)
	A0A3F3QEJ5	DNA directed RNA polymerase. (74 aa)
	A0A3F3QDT6	RNA polymerase I-specific transcription initiation factor RRN3. (710 aa)
	A0A3F3QCD1	Uncharacterized protein. (1498 aa)
	A0A3F3QBJ8	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1236 aa)
	A0A3F3Q987	Uncharacterized protein. (443 aa)
	A0A3F3Q8V7	DNA-directed RNA polymerase, subunit N/Rpb10. (74 aa)
	A0A3F3Q8I9	Cyclin Ccl1; Belongs to the cyclin family. (427 aa)
	A0A3F3Q850	A49-like RNA polymerase I associated factor-domain-containing protein. (493 aa)
	A0A3F3Q6P2	Transcription factor TFIIH complex subunit. (379 aa)
	A0A3F3Q5P8	Transcription factor TFIID-domain-containing protein. (262 aa)
	A0A3F3Q2E3	RNA polymerase. (235 aa)
	A0A3F3Q1I5	RRN7-type domain-containing protein. (542 aa)
	A0A3F3QLI4	CDK-activating kinase assembly factor MAT1-domain-containing protein. (384 aa)
	A0A3F3Q1I3	Ubiquitin-60S ribosomal protein L40. (128 aa)
	A0A3F3Q1A1	Uncharacterized protein. (110 aa)
	A0A3F3Q0P4	DNA repair helicase rad25. (818 aa)
	A0A3F3Q084	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family. (457 aa)
	A0A3F3PZL3	TFIIH subunit TTDA/Tfb5. (72 aa)
	A0A3F3PY02	SAP30_Sin3_bdg domain-containing protein. (236 aa)
	A0A3F3PXS9	SprT-like family-domain-containing protein. (715 aa)
	A0A3F3PWR5	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (121 aa)
	A0A3F3PNC9	RNA polymerase, subunit omega/K/RPB6. (160 aa)
	A0A3F3PNC7	Kinase-like domain-containing protein; Belongs to the protein kinase superfamily. (406 aa)
	A0A3F3PM45	Uncharacterized protein. (546 aa)

Your Current Organism:

Aspergillus welwitschiae

NCBI taxonomy Id: 1341132
Other names: A. welwitschiae, Aspergillus welwitschiae (Bres.) Henn., CBS 139.54, Ustilago welwitschiae

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A3F3PKB4	A0A3F3PL90	DNA-directed RNA polymerase.	Histone H2B; Belongs to the histone H2B family.	0.914
A0A3F3PKB4	A0A3F3PL95	DNA-directed RNA polymerase.	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	0.933
A0A3F3PKB4	A0A3F3PM45	DNA-directed RNA polymerase.	Uncharacterized protein.	0.776
A0A3F3PKB4	A0A3F3PNC7	DNA-directed RNA polymerase.	Kinase-like domain-containing protein; Belongs to the protein kinase superfamily.	0.902
A0A3F3PKB4	A0A3F3PNC9	DNA-directed RNA polymerase.	RNA polymerase, subunit omega/K/RPB6.	0.999
A0A3F3PKB4	A0A3F3PWR5	DNA-directed RNA polymerase.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.996
A0A3F3PKB4	A0A3F3PY02	DNA-directed RNA polymerase.	SAP30_Sin3_bdg domain-containing protein.	0.984
A0A3F3PKB4	A0A3F3PZL3	DNA-directed RNA polymerase.	TFIIH subunit TTDA/Tfb5.	0.847
A0A3F3PKB4	A0A3F3Q084	DNA-directed RNA polymerase.	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	0.941
A0A3F3PKB4	A0A3F3Q0P4	DNA-directed RNA polymerase.	DNA repair helicase rad25.	0.962
A0A3F3PKB4	A0A3F3Q1A1	DNA-directed RNA polymerase.	Uncharacterized protein.	0.998
A0A3F3PKB4	A0A3F3Q1I3	DNA-directed RNA polymerase.	Ubiquitin-60S ribosomal protein L40.	0.843
A0A3F3PKB4	A0A3F3Q1I5	DNA-directed RNA polymerase.	RRN7-type domain-containing protein.	0.843
A0A3F3PKB4	A0A3F3Q2E3	DNA-directed RNA polymerase.	RNA polymerase.	0.999
A0A3F3PKB4	A0A3F3Q5P8	DNA-directed RNA polymerase.	Transcription factor TFIID-domain-containing protein.	0.964
A0A3F3PKB4	A0A3F3Q6P2	DNA-directed RNA polymerase.	Transcription factor TFIIH complex subunit.	0.935
A0A3F3PKB4	A0A3F3Q850	DNA-directed RNA polymerase.	A49-like RNA polymerase I associated factor-domain-containing protein.	0.999
A0A3F3PKB4	A0A3F3Q8I9	DNA-directed RNA polymerase.	Cyclin Ccl1; Belongs to the cyclin family.	0.882
A0A3F3PKB4	A0A3F3Q8V7	DNA-directed RNA polymerase.	DNA-directed RNA polymerase, subunit N/Rpb10.	0.999
A0A3F3PKB4	A0A3F3Q987	DNA-directed RNA polymerase.	Uncharacterized protein.	0.999