38 items (Aspergillus welwitschiae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A3F3Q9D9	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1829 aa)
	A0A3F3PY39	RNA pol II accessory factor, Cdc73 family-domain-containing protein. (476 aa)
	A0A3F3PX54	Transcription elongation factor Spt6; Plays a role in maintenance of chromatin structure during RNA polymerase II transcription elongation thereby repressing transcription initiation from cryptic promoters. Mediates the reassembly of nucleosomes onto the promoters of at least a selected set of genes during repression; the nucleosome reassembly is essential for transcriptional repression; Belongs to the SPT6 family. (1415 aa)
	A0A3F3PTK6	DNA-directed RNA polymerase subunit E. (169 aa)
	A0A3F3PTH4	Uncharacterized protein. (498 aa)
	A0A3F3PTB2	Transcription initiation factor IIF, beta subunit-domain-containing protein. (383 aa)
	A0A3F3PSY3	Leo1-like protein-domain-containing protein. (461 aa)
	A0A3F3PNE2	DNA-directed RNA polymerase. (157 aa)
	A0A3F3PNC9	RNA polymerase, subunit omega/K/RPB6. (160 aa)
	A0A3F3PNC7	Kinase-like domain-containing protein; Belongs to the protein kinase superfamily. (406 aa)
	A0A3F3PL95	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (478 aa)
	A0A3F3PKL1	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (709 aa)
	A0A3F3QLI4	CDK-activating kinase assembly factor MAT1-domain-containing protein. (384 aa)
	A0A3F3QL33	Uncharacterized protein. (629 aa)
	A0A3F3QJF1	RNA polymerase II transcription elongation factor Rtf1p. (606 aa)
	A0A3F3QHU5	TFIIS N-terminal domain-containing protein. (461 aa)
	A0A3F3QHB8	Helicase ATP-binding domain-containing protein. (801 aa)
	A0A3F3QEJ5	DNA directed RNA polymerase. (74 aa)
	A0A3F3QE95	Uncharacterized protein. (259 aa)
	A0A3F3QDS2	MIF4G like-domain-containing protein. (849 aa)
	A0A3F3QDN1	DUF1793-domain-containing protein. (689 aa)
	A0A3F3Q8V7	DNA-directed RNA polymerase, subunit N/Rpb10. (74 aa)
	A0A3F3Q8U5	Nuclear cap-binding protein subunit 2. (176 aa)
	A0A3F3Q8I9	Cyclin Ccl1; Belongs to the cyclin family. (427 aa)
	A0A3F3Q8I4	RPOL9 domain-containing protein. (122 aa)
	A0A3F3Q7T0	Uncharacterized protein. (1615 aa)
	A0A3F3Q7L4	Transcription elongation factor SPT4; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene. (120 aa)
	A0A3F3Q6P2	Transcription factor TFIIH complex subunit. (379 aa)
	A0A3F3Q3X1	Uncharacterized protein. (576 aa)
	A0A3F3Q3J3	RNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II. (824 aa)
	A0A3F3Q2E3	RNA polymerase. (235 aa)
	A0A3F3Q211	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1747 aa)
	A0A3F3Q1A1	Uncharacterized protein. (110 aa)
	A0A3F3Q0P4	DNA repair helicase rad25. (818 aa)
	A0A3F3Q084	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family. (457 aa)
	A0A3F3PZL3	TFIIH subunit TTDA/Tfb5. (72 aa)
	A0A3F3PZ59	DNA-directed RNA polymerase. (338 aa)
	A0A3F3PZ53	Uncharacterized protein. (707 aa)

Your Current Organism:

Aspergillus welwitschiae

NCBI taxonomy Id: 1341132
Other names: A. welwitschiae, Aspergillus welwitschiae (Bres.) Henn., CBS 139.54, Ustilago welwitschiae

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A3F3PKL1	A0A3F3PL95	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	0.983
A0A3F3PKL1	A0A3F3PNC7	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	Kinase-like domain-containing protein; Belongs to the protein kinase superfamily.	0.892
A0A3F3PKL1	A0A3F3PNC9	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	RNA polymerase, subunit omega/K/RPB6.	0.982
A0A3F3PKL1	A0A3F3PNE2	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	DNA-directed RNA polymerase.	0.982
A0A3F3PKL1	A0A3F3PTB2	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	Transcription initiation factor IIF, beta subunit-domain-containing protein.	0.998
A0A3F3PKL1	A0A3F3PTH4	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	Uncharacterized protein.	0.969
A0A3F3PKL1	A0A3F3PTK6	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	DNA-directed RNA polymerase subunit E.	0.974
A0A3F3PKL1	A0A3F3PZ53	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	Uncharacterized protein.	0.692
A0A3F3PKL1	A0A3F3PZ59	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	DNA-directed RNA polymerase.	0.991
A0A3F3PKL1	A0A3F3PZL3	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	TFIIH subunit TTDA/Tfb5.	0.854
A0A3F3PKL1	A0A3F3Q084	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	0.978
A0A3F3PKL1	A0A3F3Q0P4	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	DNA repair helicase rad25.	0.980
A0A3F3PKL1	A0A3F3Q1A1	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	Uncharacterized protein.	0.972
A0A3F3PKL1	A0A3F3Q211	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.969
A0A3F3PKL1	A0A3F3Q2E3	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	RNA polymerase.	0.987
A0A3F3PKL1	A0A3F3Q3J3	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	RNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II.	0.993
A0A3F3PKL1	A0A3F3Q6P2	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	Transcription factor TFIIH complex subunit.	0.979
A0A3F3PKL1	A0A3F3Q7L4	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	Transcription elongation factor SPT4; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene.	0.738
A0A3F3PKL1	A0A3F3Q8I4	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	RPOL9 domain-containing protein.	0.994
A0A3F3PKL1	A0A3F3Q8I9	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	Cyclin Ccl1; Belongs to the cyclin family.	0.927