22 items (Streptomyces rapamycinicus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AGP52331.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (290 aa)
	AGP52332.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (314 aa)
	AGP52333.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (470 aa)
	AGP52494.1	Peptide ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (275 aa)
	AGP52495.1	ABC transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (590 aa)
	AGP52496.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (313 aa)
	AGP52497.1	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (501 aa)
	AGP52754.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (543 aa)
	AGP52755.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (322 aa)
	AGP52756.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (279 aa)
	AGP52757.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the ABC transporter superfamily. (343 aa)
	AGP52758.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the ABC transporter superfamily. (276 aa)
	AGP53913.1	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (285 aa)
	AGP53914.1	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the ABC transporter superfamily. (337 aa)
	AGP53915.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (283 aa)
	AGP53916.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (324 aa)
	AGP53917.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (549 aa)
	AGP60814.1	ABC transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the ABC transporter superfamily. (341 aa)
	AGP60815.1	Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the ABC transporter superfamily. (352 aa)
	AGP60816.1	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (304 aa)
	AGP60817.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (339 aa)
	AGP60818.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (499 aa)

Your Current Organism:

Streptomyces rapamycinicus

NCBI taxonomy Id: 1343740
Other names: S. rapamycinicus NRRL 5491, Streptomyces rapamycinicus NRRL 5491

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structured XML interaction data, according to the 'PSI-MI' data standard

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AGP52331.1	AGP52332.1	M271_03505	M271_03510	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.982
AGP52331.1	AGP52333.1	M271_03505	M271_03515	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.968
AGP52331.1	AGP52494.1	M271_03505	M271_04325	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Peptide ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.811
AGP52331.1	AGP52495.1	M271_03505	M271_04330	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	ABC transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.515
AGP52331.1	AGP52496.1	M271_03505	M271_04335	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.862
AGP52331.1	AGP52497.1	M271_03505	M271_04340	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.788
AGP52331.1	AGP52754.1	M271_03505	M271_05640	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.696
AGP52331.1	AGP52755.1	M271_03505	M271_05645	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.862
AGP52331.1	AGP52757.1	M271_03505	M271_05655	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the ABC transporter superfamily.	0.840
AGP52331.1	AGP52758.1	M271_03505	M271_05660	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the ABC transporter superfamily.	0.813
AGP52331.1	AGP53913.1	M271_03505	M271_11570	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.823
AGP52331.1	AGP53914.1	M271_03505	M271_11575	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the ABC transporter superfamily.	0.846
AGP52331.1	AGP53916.1	M271_03505	M271_11585	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.862
AGP52331.1	AGP53917.1	M271_03505	M271_11590	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.781
AGP52331.1	AGP60814.1	M271_03505	M271_47260	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	ABC transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the ABC transporter superfamily.	0.783
AGP52331.1	AGP60815.1	M271_03505	M271_47265	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the ABC transporter superfamily.	0.862
AGP52331.1	AGP60817.1	M271_03505	M271_47275	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.862
AGP52331.1	AGP60818.1	M271_03505	M271_47280	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.800
AGP52332.1	AGP52331.1	M271_03510	M271_03505	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.982
AGP52332.1	AGP52333.1	M271_03510	M271_03515	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.969