10 items (Streptomyces rapamycinicus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AGP55229.1	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (534 aa)
	AGP55230.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (307 aa)
	AGP55231.1	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (353 aa)
	dppD-2	DppD and DppF are the ATP-binding components of the ABC dipeptide transport system DppABCDF; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (341 aa)
	AGP55233.1	Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the ABC transporter superfamily. (343 aa)
	AGP55240.1	Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the ABC transporter superfamily. (385 aa)
	dppD-3	DppD and DppF are the ATP-binding components of the ABC dipeptide transport system DppABCDF; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (352 aa)
	AGP55242.1	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (325 aa)
	AGP55243.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (308 aa)
	AGP55244.1	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (547 aa)

Your Current Organism:

Streptomyces rapamycinicus

NCBI taxonomy Id: 1343740
Other names: S. rapamycinicus NRRL 5491, Streptomyces rapamycinicus NRRL 5491

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AGP55229.1	AGP55230.1	M271_18360	M271_18365	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.993
AGP55229.1	AGP55231.1	M271_18360	M271_18370	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.992
AGP55229.1	AGP55233.1	M271_18360	M271_18380	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the ABC transporter superfamily.	0.973
AGP55229.1	AGP55240.1	M271_18360	M271_18415	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the ABC transporter superfamily.	0.910
AGP55229.1	AGP55242.1	M271_18360	M271_18425	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.967
AGP55229.1	AGP55243.1	M271_18360	M271_18430	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.970
AGP55229.1	AGP55244.1	M271_18360	M271_18435	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.910
AGP55229.1	dppD-2	M271_18360	M271_18375	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	DppD and DppF are the ATP-binding components of the ABC dipeptide transport system DppABCDF; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.979
AGP55229.1	dppD-3	M271_18360	M271_18420	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	DppD and DppF are the ATP-binding components of the ABC dipeptide transport system DppABCDF; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.936
AGP55230.1	AGP55229.1	M271_18365	M271_18360	ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.993
AGP55230.1	AGP55231.1	M271_18365	M271_18370	ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.993
AGP55230.1	AGP55233.1	M271_18365	M271_18380	ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the ABC transporter superfamily.	0.987
AGP55230.1	AGP55240.1	M271_18365	M271_18415	ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the ABC transporter superfamily.	0.957
AGP55230.1	AGP55242.1	M271_18365	M271_18425	ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.973
AGP55230.1	AGP55243.1	M271_18365	M271_18430	ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.902
AGP55230.1	AGP55244.1	M271_18365	M271_18435	ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.970
AGP55230.1	dppD-2	M271_18365	M271_18375	ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	DppD and DppF are the ATP-binding components of the ABC dipeptide transport system DppABCDF; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.991
AGP55230.1	dppD-3	M271_18365	M271_18420	ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	DppD and DppF are the ATP-binding components of the ABC dipeptide transport system DppABCDF; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.970
AGP55231.1	AGP55229.1	M271_18370	M271_18360	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.992
AGP55231.1	AGP55230.1	M271_18370	M271_18365	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.993