44 items (Streptomyces rapamycinicus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AGP51893.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (306 aa)
	AGP51894.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (299 aa)
	AGP51895.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (258 aa)
	AGP51896.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the peptidase M20A family. (414 aa)
	AGP51897.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (376 aa)
	AGP52278.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (273 aa)
	AGP52279.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (298 aa)
	AGP51540.1	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (250 aa)
	AGP52432.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the bacterial solute-binding protein 3 family. (265 aa)
	AGP52433.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (259 aa)
	AGP52434.1	ABC transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (278 aa)
	AGP53058.1	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (275 aa)
	AGP51541.1	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (256 aa)
	AGP53059.1	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (417 aa)
	AGP53060.1	Glutamine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (314 aa)
	AGP53061.1	Antibiotic hydrolase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (633 aa)
	AGP54284.1	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (214 aa)
	AGP54285.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (311 aa)
	AGP51548.1	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (248 aa)
	AGP51554.1	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (258 aa)
	AGP54596.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the bacterial solute-binding protein 3 family. (306 aa)
	AGP54597.1	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (215 aa)
	AGP54598.1	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (314 aa)
	AGP55065.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (317 aa)
	AGP55066.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (312 aa)
	AGP51563.1	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (253 aa)
	AGP51616.1	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (295 aa)
	AGP56938.1	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (332 aa)
	AGP56939.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (315 aa)
	AGP56940.1	Hydrolase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (269 aa)
	AGP56941.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (320 aa)
	AGP56942.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (477 aa)
	AGP57579.1	IclR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (253 aa)
	AGP57580.1	Glutamate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (256 aa)
	AGP57581.1	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (216 aa)
	AGP57582.1	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (250 aa)
	AGP57583.1	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (291 aa)
	AGP57584.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (169 aa)
	AGP58925.1	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (296 aa)
	AGP51636.1	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (253 aa)
	AGP58926.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (320 aa)
	AGP59465.1	Arginine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (250 aa)
	AGP59466.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (311 aa)
	AGP59467.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (303 aa)

Your Current Organism:

Streptomyces rapamycinicus

NCBI taxonomy Id: 1343740
Other names: S. rapamycinicus NRRL 5491, Streptomyces rapamycinicus NRRL 5491

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AGP51540.1	AGP51893.1	M271_03245	M271_01280	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.858
AGP51540.1	AGP51894.1	M271_03245	M271_01285	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.919
AGP51540.1	AGP52278.1	M271_03245	M271_03235	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.966
AGP51540.1	AGP52279.1	M271_03245	M271_03240	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.977
AGP51540.1	AGP52432.1	M271_03245	M271_04010	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the bacterial solute-binding protein 3 family.	0.855
AGP51540.1	AGP52433.1	M271_03245	M271_04015	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.907
AGP51540.1	AGP53058.1	M271_03245	M271_07180	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.903
AGP51540.1	AGP53060.1	M271_03245	M271_07195	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.785
AGP51540.1	AGP54284.1	M271_03245	M271_13450	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.911
AGP51540.1	AGP54285.1	M271_03245	M271_13455	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.796
AGP51540.1	AGP54596.1	M271_03245	M271_15070	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the bacterial solute-binding protein 3 family.	0.835
AGP51540.1	AGP54597.1	M271_03245	M271_15075	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.911
AGP51540.1	AGP54598.1	M271_03245	M271_15080	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.921
AGP51540.1	AGP55065.1	M271_03245	M271_17515	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.859
AGP51540.1	AGP55066.1	M271_03245	M271_17520	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.907
AGP51540.1	AGP56938.1	M271_03245	M271_27355	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.907
AGP51540.1	AGP56939.1	M271_03245	M271_27360	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.603
AGP51540.1	AGP57581.1	M271_03245	M271_30740	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.906
AGP51540.1	AGP57582.1	M271_03245	M271_30745	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.906
AGP51540.1	AGP57583.1	M271_03245	M271_30750	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.652