7 items (Streptomyces rapamycinicus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AGP54284.1	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (214 aa)
	AGP54285.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (311 aa)
	AGP51548.1	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (248 aa)
	AGP51554.1	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (258 aa)
	AGP54596.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the bacterial solute-binding protein 3 family. (306 aa)
	AGP54597.1	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (215 aa)
	AGP54598.1	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (314 aa)

Your Current Organism:

Streptomyces rapamycinicus

NCBI taxonomy Id: 1343740
Other names: S. rapamycinicus NRRL 5491, Streptomyces rapamycinicus NRRL 5491

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AGP51548.1	AGP51554.1	M271_13460	M271_15065	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.901
AGP51548.1	AGP54284.1	M271_13460	M271_13450	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.997
AGP51548.1	AGP54285.1	M271_13460	M271_13455	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.993
AGP51548.1	AGP54596.1	M271_13460	M271_15070	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the bacterial solute-binding protein 3 family.	0.974
AGP51548.1	AGP54597.1	M271_13460	M271_15075	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.982
AGP51548.1	AGP54598.1	M271_13460	M271_15080	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.985
AGP51554.1	AGP51548.1	M271_15065	M271_13460	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.901
AGP51554.1	AGP54284.1	M271_15065	M271_13450	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.982
AGP51554.1	AGP54285.1	M271_15065	M271_13455	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.974
AGP51554.1	AGP54596.1	M271_15065	M271_15070	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the bacterial solute-binding protein 3 family.	0.987
AGP51554.1	AGP54597.1	M271_15065	M271_15075	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.994
AGP51554.1	AGP54598.1	M271_15065	M271_15080	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.995
AGP54284.1	AGP51548.1	M271_13450	M271_13460	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997
AGP54284.1	AGP51554.1	M271_13450	M271_15065	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.982
AGP54284.1	AGP54285.1	M271_13450	M271_13455	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.997
AGP54284.1	AGP54596.1	M271_13450	M271_15070	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the bacterial solute-binding protein 3 family.	0.990
AGP54284.1	AGP54597.1	M271_13450	M271_15075	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.903
AGP54284.1	AGP54598.1	M271_13450	M271_15080	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.905
AGP54285.1	AGP51548.1	M271_13455	M271_13460	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.993
AGP54285.1	AGP51554.1	M271_13455	M271_15065	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.974