(74 nodes) Mixed, incl. GMC oxidoreductase, and Tetratricopeptide repeat network (Streptomyces rapamycinicus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AGP51654.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (777 aa)
	AGP51723.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (310 aa)
	AGP51884.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (943 aa)
	AGP51921.1	Oxidoreductase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (535 aa)
	AGP51966.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (1185 aa)
	AGP52045.1	Calcium-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (177 aa)
	AGP52326.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (146 aa)
	AGP52539.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (235 aa)
	AGP52605.1	Helicase SNF2; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (983 aa)
	AGP52615.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (506 aa)
	AGP52779.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (804 aa)
	AGP53107.1	SARP family transcriptional regulator; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (937 aa)
	AGP53303.1	Calcium-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (72 aa)
	AGP53351.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (476 aa)
	AGP53460.1	SARP family transcriptional regulator; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (870 aa)
	AGP53461.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (33 aa)
	AGP53462.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (372 aa)
	AGP53590.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (658 aa)
	AGP53605.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (209 aa)
	AGP53606.1	CbxX/CfqX; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (629 aa)
	AGP53782.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (611 aa)
	AGP53828.1	Aromatic ring-opening dioxygenase LigA; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the serpin family. (397 aa)
	AGP53898.1	Betaine-aldehyde dehydrogenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the aldehyde dehydrogenase family. (489 aa)
	AGP53899.1	Amino acid permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (515 aa)
	AGP53900.1	Choline oxidase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (516 aa)
	AGP54240.1	PBS lyase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (226 aa)
	AGP54242.1	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (238 aa)
	AGP54307.1	Calcium-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (74 aa)
	AGP54500.1	Crp/Fnr family transcription regulator; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (239 aa)
	AGP54559.1	Serine protease; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (276 aa)
	AGP54692.1	Gamma-aminobutyraldehyde dehydrogenase; Catalyzes the formation of 4-aminobutanoate from 4-aminobutanal; involved in putrescine degradation; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the aldehyde dehydrogenase family. (506 aa)
	AGP55005.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (145 aa)
	AGP55399.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (68 aa)
	AGP55424.1	Cytochrome P450; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the cytochrome P450 family. (410 aa)
	AGP55425.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (79 aa)
	AGP55426.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (134 aa)
	AGP55615.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (165 aa)
	AGP55680.1	Cell surface protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (250 aa)
	AGP56021.1	Acetoin utilization protein AcuC; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (383 aa)
	AGP56766.1	Crp/Fnr family transcriptional regulator; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (224 aa)
	AGP56768.1	NUDIX hydrolase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (220 aa)
	AGP56769.1	Colicin V synthesis protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (400 aa)
	AGP57114.1	Cholesterol oxidase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (625 aa)
	AGP57144.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (485 aa)
	AGP57156.1	Betaine-aldehyde dehydrogenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the aldehyde dehydrogenase family. (500 aa)
	AGP57157.1	Oxidoreductase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (528 aa)
	AGP57366.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (166 aa)
	AGP57498.1	Beta-lactamase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (250 aa)
	AGP57762.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (872 aa)
	AGP57833.1	ATP/GTP-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (734 aa)
	AGP57834.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (140 aa)
	AGP58038.1	Protein-tyrosine phosphatase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (147 aa)
	AGP58212.1	Phosphohydrolase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (216 aa)
	AGP58213.1	Steroid C27-monooxygenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the cytochrome P450 family. (410 aa)
	AGP58663.1	Trypsin; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (265 aa)
	AGP58857.1	ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (733 aa)
	AGP59105.1	Peptidylprolyl isomerase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (322 aa)
	AGP59106.1	Peptidyl-prolyl cis-trans isomerase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (124 aa)
	AGP59428.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (548 aa)
	AGP59443.1	Serine/threonine protein kinase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (1131 aa)
	AGP59589.1	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (891 aa)
	AGP59592.1	ABC transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (647 aa)
	AGP59621.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (563 aa)
	cobB-2	NAD-dependent deacetylase; NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form; Belongs to the sirtuin family. Class II subfamily. (296 aa)
	AGP59786.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (435 aa)
	AGP59918.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (1053 aa)
	AGP60063.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (283 aa)
	AGP60065.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (152 aa)
	AGP60066.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (184 aa)
	AGP60087.1	Betaine-aldehyde dehydrogenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the aldehyde dehydrogenase family. (488 aa)
	AGP60187.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (222 aa)
	AGP60758.1	Cholesterol oxidase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (551 aa)
	AGP61330.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (883 aa)
	AGP61473.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (215 aa)

Your Current Organism:

Streptomyces rapamycinicus

NCBI taxonomy Id: 1343740
Other names: S. rapamycinicus NRRL 5491, Streptomyces rapamycinicus NRRL 5491

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AGP51654.1	AGP51921.1	M271_00065	M271_01420	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Oxidoreductase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.418
AGP51654.1	AGP51966.1	M271_00065	M271_01650	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.536
AGP51654.1	AGP52045.1	M271_00065	M271_02050	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Calcium-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.423
AGP51654.1	AGP52326.1	M271_00065	M271_03480	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.532
AGP51654.1	AGP52605.1	M271_00065	M271_04890	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Helicase SNF2; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.453
AGP51654.1	AGP52615.1	M271_00065	M271_04940	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.418
AGP51654.1	AGP53303.1	M271_00065	M271_08415	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Calcium-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.423
AGP51654.1	AGP53351.1	M271_00065	M271_08655	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.532
AGP51654.1	AGP53460.1	M271_00065	M271_09235	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	SARP family transcriptional regulator; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.498
AGP51654.1	AGP53590.1	M271_00065	M271_09895	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.513
AGP51654.1	AGP53828.1	M271_00065	M271_11135	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Aromatic ring-opening dioxygenase LigA; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the serpin family.	0.483
AGP51654.1	AGP53900.1	M271_00065	M271_11505	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Choline oxidase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.418
AGP51654.1	AGP54240.1	M271_00065	M271_13230	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	PBS lyase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.557
AGP51654.1	AGP54307.1	M271_00065	M271_13570	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Calcium-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.490
AGP51654.1	AGP54500.1	M271_00065	M271_14565	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Crp/Fnr family transcription regulator; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.400
AGP51654.1	AGP55005.1	M271_00065	M271_17215	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.472
AGP51654.1	AGP55615.1	M271_00065	M271_20350	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.685
AGP51654.1	AGP56021.1	M271_00065	M271_22530	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Acetoin utilization protein AcuC; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.409
AGP51654.1	AGP56766.1	M271_00065	M271_26450	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Crp/Fnr family transcriptional regulator; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.400
AGP51654.1	AGP57114.1	M271_00065	M271_28270	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Cholesterol oxidase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.418