(16 nodes) Mixed, incl. Polysaccharide deacetylase, and Glycosyl transferase family 39/83 network (Streptomyces rapamycinicus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AGP54927.1	Polysaccharide deacetylase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (665 aa)
	AGP55299.1	Bi-functional transferase/deacetylase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (787 aa)
	AGP55576.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (651 aa)
	AGP57464.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (273 aa)
	AGP58778.1	Deacetylase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (293 aa)
	AGP59027.1	Glycosyl transferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (609 aa)
	AGP59604.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (380 aa)
	AGP59605.1	Polysaccharide deacetylase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (297 aa)
	AGP59606.1	Amidohydrolase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the peptidase M20A family. (387 aa)
	AGP59754.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (311 aa)
	AGP59755.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (302 aa)
	AGP59756.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (299 aa)
	AGP60682.1	Transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the major facilitator superfamily. (521 aa)
	AGP60683.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (196 aa)
	AGP60684.1	Glycosyltransferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (563 aa)
	AGP61073.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (271 aa)

Your Current Organism:

Streptomyces rapamycinicus

NCBI taxonomy Id: 1343740
Other names: S. rapamycinicus NRRL 5491, Streptomyces rapamycinicus NRRL 5491

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AGP54927.1	AGP55299.1	M271_16810	M271_18730	Polysaccharide deacetylase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Bi-functional transferase/deacetylase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.810
AGP54927.1	AGP57464.1	M271_16810	M271_30120	Polysaccharide deacetylase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.460
AGP54927.1	AGP58778.1	M271_16810	M271_36885	Polysaccharide deacetylase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Deacetylase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.419
AGP54927.1	AGP59027.1	M271_16810	M271_38160	Polysaccharide deacetylase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Glycosyl transferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.592
AGP54927.1	AGP59605.1	M271_16810	M271_41140	Polysaccharide deacetylase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Polysaccharide deacetylase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.419
AGP54927.1	AGP59754.1	M271_16810	M271_41890	Polysaccharide deacetylase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.419
AGP54927.1	AGP59755.1	M271_16810	M271_41895	Polysaccharide deacetylase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.419
AGP54927.1	AGP60684.1	M271_16810	M271_46605	Polysaccharide deacetylase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Glycosyltransferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.455
AGP54927.1	AGP61073.1	M271_16810	M271_48555	Polysaccharide deacetylase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.419
AGP55299.1	AGP54927.1	M271_18730	M271_16810	Bi-functional transferase/deacetylase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Polysaccharide deacetylase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.810
AGP55299.1	AGP57464.1	M271_18730	M271_30120	Bi-functional transferase/deacetylase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.534
AGP55299.1	AGP58778.1	M271_18730	M271_36885	Bi-functional transferase/deacetylase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Deacetylase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.518
AGP55299.1	AGP59027.1	M271_18730	M271_38160	Bi-functional transferase/deacetylase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Glycosyl transferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.533
AGP55299.1	AGP59605.1	M271_18730	M271_41140	Bi-functional transferase/deacetylase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Polysaccharide deacetylase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.485
AGP55299.1	AGP59754.1	M271_18730	M271_41890	Bi-functional transferase/deacetylase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.485
AGP55299.1	AGP59755.1	M271_18730	M271_41895	Bi-functional transferase/deacetylase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.485
AGP55299.1	AGP60684.1	M271_18730	M271_46605	Bi-functional transferase/deacetylase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Glycosyltransferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.533
AGP55299.1	AGP61073.1	M271_18730	M271_48555	Bi-functional transferase/deacetylase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.485
AGP55576.1	AGP59027.1	M271_20150	M271_38160	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Glycosyl transferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.865
AGP57464.1	AGP54927.1	M271_30120	M271_16810	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Polysaccharide deacetylase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.460