(11 nodes) Mixed, incl. Four-carbon acid sugar kinase, nucleotide binding domain, and Class II aldolase/adducin N-terminal network (Streptomyces rapamycinicus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AGP59369.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (214 aa)
	AGP59370.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (422 aa)
	AGP59371.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (206 aa)
	AGP60964.1	NAD-dependent epimerase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (338 aa)
	AGP60965.1	Hydroxypyruvate isomerase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the hyi family. (263 aa)
	AGP60966.1	MFS transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (430 aa)
	AGP60967.1	Aldolase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (224 aa)
	AGP60968.1	HPr kinase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (426 aa)
	AGP60969.1	3-hydroxyisobutyrate dehydrogenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (305 aa)
	AGP60970.1	Beta-lactamase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (213 aa)
	AGP60971.1	MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (141 aa)

Your Current Organism:

Streptomyces rapamycinicus

NCBI taxonomy Id: 1343740
Other names: S. rapamycinicus NRRL 5491, Streptomyces rapamycinicus NRRL 5491

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AGP59369.1	AGP59370.1	M271_39940	M271_39945	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.972
AGP59369.1	AGP59371.1	M271_39940	M271_39950	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.811
AGP59369.1	AGP60964.1	M271_39940	M271_48010	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	NAD-dependent epimerase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.709
AGP59369.1	AGP60965.1	M271_39940	M271_48015	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hydroxypyruvate isomerase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the hyi family.	0.573
AGP59369.1	AGP60968.1	M271_39940	M271_48030	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	HPr kinase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.880
AGP59369.1	AGP60969.1	M271_39940	M271_48035	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	3-hydroxyisobutyrate dehydrogenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.564
AGP59370.1	AGP59369.1	M271_39945	M271_39940	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.972
AGP59370.1	AGP59371.1	M271_39945	M271_39950	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.862
AGP59370.1	AGP60964.1	M271_39945	M271_48010	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	NAD-dependent epimerase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.761
AGP59370.1	AGP60965.1	M271_39945	M271_48015	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hydroxypyruvate isomerase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the hyi family.	0.711
AGP59370.1	AGP60967.1	M271_39945	M271_48025	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Aldolase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.836
AGP59370.1	AGP60969.1	M271_39945	M271_48035	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	3-hydroxyisobutyrate dehydrogenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.681
AGP59371.1	AGP59369.1	M271_39950	M271_39940	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.811
AGP59371.1	AGP59370.1	M271_39950	M271_39945	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.862
AGP59371.1	AGP60967.1	M271_39950	M271_48025	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Aldolase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.575
AGP59371.1	AGP60968.1	M271_39950	M271_48030	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	HPr kinase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.669
AGP60964.1	AGP59369.1	M271_48010	M271_39940	NAD-dependent epimerase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.709
AGP60964.1	AGP59370.1	M271_48010	M271_39945	NAD-dependent epimerase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.761
AGP60964.1	AGP60965.1	M271_48010	M271_48015	NAD-dependent epimerase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hydroxypyruvate isomerase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the hyi family.	0.884
AGP60964.1	AGP60966.1	M271_48010	M271_48020	NAD-dependent epimerase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	MFS transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.699