(16 nodes) Glycoside transport, and Daunorubicin resistance ABC transporter ATP-binding subunit DrrA network (Streptomyces rapamycinicus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AGP53870.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (269 aa)
	AGP53871.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (329 aa)
	AGP54279.1	Multidrug ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (250 aa)
	AGP54280.1	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (259 aa)
	AGP55379.1	ABC transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (268 aa)
	AGP55380.1	ABC transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (308 aa)
	AGP56086.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (247 aa)
	AGP56087.1	ABC transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (339 aa)
	AGP56878.1	IclR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (332 aa)
	AGP56879.1	Multidrug ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (261 aa)
	AGP58142.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (254 aa)
	AGP58143.1	ABC transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (330 aa)
	AGP58429.1	ABC transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (274 aa)
	AGP58430.1	ABC transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (337 aa)
	AGP61485.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (263 aa)
	AGP61486.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (320 aa)

Your Current Organism:

Streptomyces rapamycinicus

NCBI taxonomy Id: 1343740
Other names: S. rapamycinicus NRRL 5491, Streptomyces rapamycinicus NRRL 5491

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AGP53870.1	AGP53871.1	M271_11350	M271_11355	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.965
AGP53870.1	AGP54279.1	M271_11350	M271_13425	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Multidrug ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.840
AGP53870.1	AGP54280.1	M271_11350	M271_13430	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.777
AGP53870.1	AGP55379.1	M271_11350	M271_19150	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	ABC transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.787
AGP53870.1	AGP55380.1	M271_11350	M271_19155	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	ABC transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.841
AGP53870.1	AGP56086.1	M271_11350	M271_22855	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.752
AGP53870.1	AGP56087.1	M271_11350	M271_22860	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	ABC transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.851
AGP53870.1	AGP56878.1	M271_11350	M271_27040	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	IclR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.842
AGP53870.1	AGP56879.1	M271_11350	M271_27045	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Multidrug ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.792
AGP53870.1	AGP58142.1	M271_11350	M271_33640	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.407
AGP53870.1	AGP58143.1	M271_11350	M271_33645	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	ABC transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.851
AGP53870.1	AGP58429.1	M271_11350	M271_35110	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	ABC transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.787
AGP53870.1	AGP58430.1	M271_11350	M271_35115	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	ABC transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.842
AGP53870.1	AGP61486.1	M271_11350	M271_50655	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.852
AGP53871.1	AGP53870.1	M271_11355	M271_11350	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.965
AGP53871.1	AGP54279.1	M271_11355	M271_13425	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Multidrug ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.827
AGP53871.1	AGP55379.1	M271_11355	M271_19150	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	ABC transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.841
AGP53871.1	AGP56086.1	M271_11355	M271_22855	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.850
AGP53871.1	AGP56879.1	M271_11355	M271_27045	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Multidrug ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.841
AGP53871.1	AGP58142.1	M271_11355	M271_33640	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.850