(6 nodes) Domain of unknown function DUF4162, and Glycoside transport network (Streptomyces rapamycinicus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AGP55379.1	ABC transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (268 aa)
	AGP55380.1	ABC transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (308 aa)
	AGP58429.1	ABC transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (274 aa)
	AGP58430.1	ABC transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (337 aa)
	AGP61485.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (263 aa)
	AGP61486.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (320 aa)

Your Current Organism:

Streptomyces rapamycinicus

NCBI taxonomy Id: 1343740
Other names: S. rapamycinicus NRRL 5491, Streptomyces rapamycinicus NRRL 5491

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AGP55379.1	AGP55380.1	M271_19150	M271_19155	ABC transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	ABC transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.965
AGP55379.1	AGP58429.1	M271_19150	M271_35110	ABC transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	ABC transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.483
AGP55379.1	AGP58430.1	M271_19150	M271_35115	ABC transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	ABC transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.853
AGP55379.1	AGP61485.1	M271_19150	M271_50650	ABC transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.789
AGP55379.1	AGP61486.1	M271_19150	M271_50655	ABC transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.842
AGP55380.1	AGP55379.1	M271_19155	M271_19150	ABC transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	ABC transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.965
AGP55380.1	AGP58429.1	M271_19155	M271_35110	ABC transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	ABC transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.855
AGP55380.1	AGP61485.1	M271_19155	M271_50650	ABC transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.833
AGP58429.1	AGP55379.1	M271_35110	M271_19150	ABC transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	ABC transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.483
AGP58429.1	AGP55380.1	M271_35110	M271_19155	ABC transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	ABC transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.855
AGP58429.1	AGP58430.1	M271_35110	M271_35115	ABC transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	ABC transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.992
AGP58429.1	AGP61485.1	M271_35110	M271_50650	ABC transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.793
AGP58429.1	AGP61486.1	M271_35110	M271_50655	ABC transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.843
AGP58430.1	AGP55379.1	M271_35115	M271_19150	ABC transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	ABC transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.853
AGP58430.1	AGP58429.1	M271_35115	M271_35110	ABC transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	ABC transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.992
AGP58430.1	AGP61485.1	M271_35115	M271_50650	ABC transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.836
AGP61485.1	AGP55379.1	M271_50650	M271_19150	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	ABC transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.789
AGP61485.1	AGP55380.1	M271_50650	M271_19155	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	ABC transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.833
AGP61485.1	AGP58429.1	M271_50650	M271_35110	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	ABC transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.793
AGP61485.1	AGP58430.1	M271_50650	M271_35115	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	ABC transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.836