(11 nodes) Mostly uncharacterized, incl. Peptidase M48, protease HtpX, putative, and ABC-2 family transporter protein network (Streptomyces rapamycinicus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AGP52431.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (75 aa)
	AGP55184.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (176 aa)
	AGP56581.1	Hydrolase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (290 aa)
	AGP56582.1	Luciferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (302 aa)
	htpX-2	Heat shock protein HtpX; Metalloprotease; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the peptidase M48B family. (302 aa)
	AGP56584.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (194 aa)
	AGP56586.1	ABC transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (347 aa)
	AGP56587.1	Membrane protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (299 aa)
	AGP56588.1	ABC transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (308 aa)
	AGP56589.1	Membrane protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (242 aa)
	AGP56906.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (356 aa)

Your Current Organism:

Streptomyces rapamycinicus

NCBI taxonomy Id: 1343740
Other names: S. rapamycinicus NRRL 5491, Streptomyces rapamycinicus NRRL 5491

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AGP52431.1	AGP56586.1	M271_04005	M271_25495	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	ABC transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.551
AGP52431.1	AGP56587.1	M271_04005	M271_25500	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Membrane protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.551
AGP52431.1	AGP56588.1	M271_04005	M271_25505	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	ABC transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.551
AGP52431.1	AGP56589.1	M271_04005	M271_25510	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Membrane protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.551
AGP55184.1	AGP56586.1	M271_18135	M271_25495	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	ABC transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.586
AGP55184.1	AGP56587.1	M271_18135	M271_25500	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Membrane protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.670
AGP55184.1	AGP56588.1	M271_18135	M271_25505	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	ABC transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.585
AGP55184.1	AGP56589.1	M271_18135	M271_25510	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Membrane protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.706
AGP55184.1	AGP56906.1	M271_18135	M271_27190	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.765
AGP56581.1	AGP56582.1	M271_25470	M271_25475	Hydrolase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Luciferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.756
AGP56581.1	AGP56584.1	M271_25470	M271_25485	Hydrolase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.686
AGP56581.1	AGP56586.1	M271_25470	M271_25495	Hydrolase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	ABC transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.666
AGP56581.1	AGP56587.1	M271_25470	M271_25500	Hydrolase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Membrane protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.617
AGP56581.1	AGP56588.1	M271_25470	M271_25505	Hydrolase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	ABC transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.666
AGP56581.1	AGP56589.1	M271_25470	M271_25510	Hydrolase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Membrane protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.556
AGP56581.1	htpX-2	M271_25470	M271_25480	Hydrolase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Heat shock protein HtpX; Metalloprotease; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the peptidase M48B family.	0.686
AGP56582.1	AGP56581.1	M271_25475	M271_25470	Luciferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hydrolase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.756
AGP56582.1	AGP56584.1	M271_25475	M271_25485	Luciferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.761
AGP56582.1	AGP56586.1	M271_25475	M271_25495	Luciferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	ABC transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.636
AGP56582.1	AGP56587.1	M271_25475	M271_25500	Luciferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Membrane protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.636