(9 nodes) Pentose catabolic process network (Streptomyces rapamycinicus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AGP60524.1	Fumarylacetoacetate hydrolase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (311 aa)
	xylB	Xylulokinase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (469 aa)
	AGP53637.1	Ribulose-phosphate 3-epimerase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the ribulose-phosphate 3-epimerase family. (224 aa)
	rbsD	Ribose pyranase; Catalyzes the interconversion of beta-pyran and beta-furan forms of D-ribose. (131 aa)
	AGP58035.1	Sugar kinase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the FGGY kinase family. (512 aa)
	AGP58804.1	Fuculose phosphate aldolase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (228 aa)
	AGP59369.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (214 aa)
	AGP59740.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (495 aa)
	AGP60967.1	Aldolase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (224 aa)

Your Current Organism:

Streptomyces rapamycinicus

NCBI taxonomy Id: 1343740
Other names: S. rapamycinicus NRRL 5491, Streptomyces rapamycinicus NRRL 5491

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AGP53637.1	AGP58035.1	M271_10130	M271_33085	Ribulose-phosphate 3-epimerase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the ribulose-phosphate 3-epimerase family.	Sugar kinase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the FGGY kinase family.	0.925
AGP53637.1	AGP59740.1	M271_10130	M271_41820	Ribulose-phosphate 3-epimerase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the ribulose-phosphate 3-epimerase family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.926
AGP53637.1	xylB	M271_10130	M271_04905	Ribulose-phosphate 3-epimerase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the ribulose-phosphate 3-epimerase family.	Xylulokinase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.925
AGP58035.1	AGP53637.1	M271_33085	M271_10130	Sugar kinase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the FGGY kinase family.	Ribulose-phosphate 3-epimerase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the ribulose-phosphate 3-epimerase family.	0.925
AGP58035.1	AGP58804.1	M271_33085	M271_37015	Sugar kinase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the FGGY kinase family.	Fuculose phosphate aldolase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.482
AGP58035.1	AGP59369.1	M271_33085	M271_39940	Sugar kinase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the FGGY kinase family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.407
AGP58035.1	AGP60967.1	M271_33085	M271_48025	Sugar kinase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the FGGY kinase family.	Aldolase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.407
AGP58804.1	AGP58035.1	M271_37015	M271_33085	Fuculose phosphate aldolase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Sugar kinase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the FGGY kinase family.	0.482
AGP58804.1	AGP59740.1	M271_37015	M271_41820	Fuculose phosphate aldolase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.407
AGP58804.1	xylB	M271_37015	M271_04905	Fuculose phosphate aldolase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Xylulokinase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.490
AGP59369.1	AGP58035.1	M271_39940	M271_33085	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Sugar kinase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the FGGY kinase family.	0.407
AGP59369.1	AGP59740.1	M271_39940	M271_41820	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.407
AGP59369.1	xylB	M271_39940	M271_04905	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Xylulokinase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.407
AGP59740.1	AGP53637.1	M271_41820	M271_10130	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Ribulose-phosphate 3-epimerase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the ribulose-phosphate 3-epimerase family.	0.926
AGP59740.1	AGP58804.1	M271_41820	M271_37015	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Fuculose phosphate aldolase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.407
AGP59740.1	AGP59369.1	M271_41820	M271_39940	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.407
AGP59740.1	AGP60967.1	M271_41820	M271_48025	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Aldolase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.407
AGP60967.1	AGP58035.1	M271_48025	M271_33085	Aldolase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Sugar kinase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the FGGY kinase family.	0.407
AGP60967.1	AGP59740.1	M271_48025	M271_41820	Aldolase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.407
AGP60967.1	xylB	M271_48025	M271_04905	Aldolase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Xylulokinase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.407