(26 nodes) FAD dependent oxidoreductase network (Streptomyces rapamycinicus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AGP51777.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (251 aa)
	AGP51786.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (434 aa)
	AGP51825.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (456 aa)
	AGP51869.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (375 aa)
	AGP52106.1	Sarcosine oxidase subunit beta; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (406 aa)
	AGP52317.1	Sarcosine oxidase subunit beta; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (390 aa)
	AGP52345.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (382 aa)
	AGP52632.1	Ferredoxin; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (475 aa)
	AGP52980.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (428 aa)
	AGP54687.1	FAD-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (482 aa)
	AGP55744.1	FAD-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family. (568 aa)
	AGP56126.1	Hydroxyglutarate oxidase; Catalyzed the formation of 2-ketoglutarate from 2-hydroxyglutarate; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (404 aa)
	AGP56404.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (474 aa)
	AGP56702.1	D-amino acid dehydrogenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (422 aa)
	AGP58569.1	Glycine oxidase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (440 aa)
	AGP59083.1	Glycerol-3-phosphate dehydrogenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (537 aa)
	AGP59387.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (480 aa)
	AGP59464.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (386 aa)
	AGP59539.1	FAD-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (557 aa)
	AGP59888.1	FAD-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (372 aa)
	AGP60089.1	Sarcosine dehydrogenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the GcvT family. (807 aa)
	AGP60303.1	Iron-sulfur binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (508 aa)
	AGP60617.1	FAD-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (464 aa)
	AGP60709.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (455 aa)
	AGP60879.1	FAD-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (358 aa)
	AGP61085.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (382 aa)

Your Current Organism:

Streptomyces rapamycinicus

NCBI taxonomy Id: 1343740
Other names: S. rapamycinicus NRRL 5491, Streptomyces rapamycinicus NRRL 5491

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AGP51777.1	AGP51786.1	M271_00700	M271_00745	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.915
AGP51777.1	AGP51825.1	M271_00700	M271_00940	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.920
AGP51777.1	AGP52106.1	M271_00700	M271_02365	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Sarcosine oxidase subunit beta; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.903
AGP51777.1	AGP52317.1	M271_00700	M271_03435	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Sarcosine oxidase subunit beta; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.914
AGP51777.1	AGP60089.1	M271_00700	M271_43595	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Sarcosine dehydrogenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the GcvT family.	0.971
AGP51786.1	AGP51777.1	M271_00745	M271_00700	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.915
AGP51786.1	AGP51825.1	M271_00745	M271_00940	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.904
AGP51786.1	AGP52106.1	M271_00745	M271_02365	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Sarcosine oxidase subunit beta; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.918
AGP51786.1	AGP52317.1	M271_00745	M271_03435	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Sarcosine oxidase subunit beta; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.927
AGP51786.1	AGP60089.1	M271_00745	M271_43595	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Sarcosine dehydrogenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the GcvT family.	0.950
AGP51825.1	AGP51777.1	M271_00940	M271_00700	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.920
AGP51825.1	AGP51786.1	M271_00940	M271_00745	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.904
AGP51825.1	AGP52106.1	M271_00940	M271_02365	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Sarcosine oxidase subunit beta; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.930
AGP51825.1	AGP52317.1	M271_00940	M271_03435	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Sarcosine oxidase subunit beta; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.927
AGP51825.1	AGP60089.1	M271_00940	M271_43595	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Sarcosine dehydrogenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the GcvT family.	0.951
AGP51869.1	AGP56404.1	M271_01160	M271_24550	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.501
AGP51869.1	AGP60089.1	M271_01160	M271_43595	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Sarcosine dehydrogenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the GcvT family.	0.595
AGP52106.1	AGP51777.1	M271_02365	M271_00700	Sarcosine oxidase subunit beta; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.903
AGP52106.1	AGP51786.1	M271_02365	M271_00745	Sarcosine oxidase subunit beta; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.918
AGP52106.1	AGP51825.1	M271_02365	M271_00940	Sarcosine oxidase subunit beta; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.930