(4 nodes) Flavin-dependent halogenase network (Streptomyces rapamycinicus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AGP53580.1	FAD-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (553 aa)
	AGP53577.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (357 aa)
	AGP51709.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (452 aa)
	AGP53439.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (497 aa)

Your Current Organism:

Streptomyces rapamycinicus

NCBI taxonomy Id: 1343740
Other names: S. rapamycinicus NRRL 5491, Streptomyces rapamycinicus NRRL 5491

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AGP51709.1	AGP53439.1	M271_00350	M271_09130	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.902
AGP53439.1	AGP51709.1	M271_09130	M271_00350	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.902
AGP53577.1	AGP53580.1	M271_09830	M271_09845	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	FAD-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.809
AGP53580.1	AGP53577.1	M271_09845	M271_09830	FAD-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.809