(56 nodes) Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily network (Streptomyces rapamycinicus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AGP51732.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (372 aa)
	AGP51733.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (368 aa)
	AGP51748.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (383 aa)
	AGP51749.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (404 aa)
	AGP51943.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (392 aa)
	AGP52192.1	Oxidoreductase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (413 aa)
	AGP52248.1	2,4,6-trichlorophenol monooxygenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (504 aa)
	AGP52491.1	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (387 aa)
	AGP52616.1	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (383 aa)
	AGP52617.1	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (401 aa)
	AGP52892.1	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (548 aa)
	AGP53154.1	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (408 aa)
	AGP53333.1	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (410 aa)
	AGP53335.1	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (400 aa)
	AGP53339.1	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (387 aa)
	AGP53344.1	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (400 aa)
	AGP53523.1	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (390 aa)
	AGP53907.1	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (399 aa)
	AGP54074.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (428 aa)
	AGP54076.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (336 aa)
	AGP54077.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (384 aa)
	AGP54249.1	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (400 aa)
	AGP54674.1	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (644 aa)
	AGP55719.1	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (468 aa)
	AGP55733.1	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (464 aa)
	AGP55737.1	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (363 aa)
	AGP55738.1	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (387 aa)
	AGP56447.1	butyryl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (608 aa)
	AGP56485.1	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (382 aa)
	AGP57082.1	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (386 aa)
	AGP57659.1	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (388 aa)
	AGP57664.1	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (385 aa)
	AGP58920.1	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (395 aa)
	AGP58963.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (737 aa)
	AGP59014.1	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (404 aa)
	AGP59595.1	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (388 aa)
	AGP59868.1	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (379 aa)
	AGP60034.1	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (396 aa)
	AGP60208.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (432 aa)
	AGP60210.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (329 aa)
	AGP60211.1	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (389 aa)
	AGP60249.1	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (396 aa)
	AGP60254.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (385 aa)
	AGP60609.1	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (398 aa)
	AGP60936.1	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (350 aa)
	AGP61042.1	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (390 aa)
	AGP61156.1	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (396 aa)
	AGP61158.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (558 aa)
	AGP61236.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (385 aa)
	AGP61259.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (375 aa)
	AGP61260.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (395 aa)
	AGP61265.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (367 aa)
	AGP61266.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (374 aa)
	AGP61295.1	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (392 aa)
	AGP61386.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (365 aa)
	AGP61471.1	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (381 aa)

Your Current Organism:

Streptomyces rapamycinicus

NCBI taxonomy Id: 1343740
Other names: S. rapamycinicus NRRL 5491, Streptomyces rapamycinicus NRRL 5491

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AGP51732.1	AGP51733.1	M271_00465	M271_00470	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.971
AGP51732.1	AGP52616.1	M271_00465	M271_04945	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.624
AGP51732.1	AGP53154.1	M271_00465	M271_07670	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.633
AGP51732.1	AGP53339.1	M271_00465	M271_08595	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.760
AGP51732.1	AGP54076.1	M271_00465	M271_12400	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.656
AGP51732.1	AGP55719.1	M271_00465	M271_20875	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.762
AGP51732.1	AGP55737.1	M271_00465	M271_20965	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.699
AGP51732.1	AGP56485.1	M271_00465	M271_24955	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.647
AGP51732.1	AGP58920.1	M271_00465	M271_37615	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.672
AGP51732.1	AGP60210.1	M271_00465	M271_44210	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.566
AGP51732.1	AGP60254.1	M271_00465	M271_44430	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.429
AGP51732.1	AGP61156.1	M271_00465	M271_48970	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.671
AGP51732.1	AGP61259.1	M271_00465	M271_49485	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.767
AGP51732.1	AGP61266.1	M271_00465	M271_49520	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.501
AGP51733.1	AGP51732.1	M271_00470	M271_00465	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.971
AGP51733.1	AGP54077.1	M271_00470	M271_12405	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.415
AGP51733.1	AGP55719.1	M271_00470	M271_20875	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.475
AGP51733.1	AGP55738.1	M271_00470	M271_20970	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.496
AGP51733.1	AGP58920.1	M271_00470	M271_37615	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.650
AGP51733.1	AGP61156.1	M271_00470	M271_48970	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.650