(20 nodes) ABC-2 type transporter network (Streptomyces rapamycinicus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AGP54279.1	Multidrug ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (250 aa)
	AGP61485.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (263 aa)
	AGP59901.1	Membrane protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (271 aa)
	AGP59589.1	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (891 aa)
	AGP58857.1	ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (733 aa)
	AGP58740.1	ABC transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (257 aa)
	AGP58616.1	Transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (252 aa)
	AGP58429.1	ABC transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (274 aa)
	AGP58142.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (254 aa)
	AGP57764.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (478 aa)
	AGP57005.1	ABC transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (264 aa)
	AGP56879.1	Multidrug ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (261 aa)
	AGP56086.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (247 aa)
	AGP55379.1	ABC transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (268 aa)
	AGP54972.1	Multidrug ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (251 aa)
	AGP53870.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (269 aa)
	AGP53851.1	ABC transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (300 aa)
	AGP53675.1	ABC transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (286 aa)
	AGP52914.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (245 aa)
	AGP52327.1	Multidrug ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (289 aa)

Your Current Organism:

Streptomyces rapamycinicus

NCBI taxonomy Id: 1343740
Other names: S. rapamycinicus NRRL 5491, Streptomyces rapamycinicus NRRL 5491

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AGP52327.1	AGP52914.1	M271_03485	M271_06445	Multidrug ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.454
AGP52327.1	AGP53870.1	M271_03485	M271_11350	Multidrug ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.790
AGP52327.1	AGP54279.1	M271_03485	M271_13425	Multidrug ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Multidrug ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.505
AGP52327.1	AGP54972.1	M271_03485	M271_17035	Multidrug ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Multidrug ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.507
AGP52327.1	AGP55379.1	M271_03485	M271_19150	Multidrug ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	ABC transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.530
AGP52327.1	AGP56086.1	M271_03485	M271_22855	Multidrug ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.507
AGP52327.1	AGP56879.1	M271_03485	M271_27045	Multidrug ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Multidrug ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.522
AGP52327.1	AGP57005.1	M271_03485	M271_27700	Multidrug ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	ABC transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.533
AGP52327.1	AGP58142.1	M271_03485	M271_33640	Multidrug ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.881
AGP52327.1	AGP58429.1	M271_03485	M271_35110	Multidrug ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	ABC transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.519
AGP52327.1	AGP58740.1	M271_03485	M271_36695	Multidrug ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	ABC transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.412
AGP52327.1	AGP61485.1	M271_03485	M271_50650	Multidrug ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.850
AGP52914.1	AGP52327.1	M271_06445	M271_03485	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Multidrug ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.454
AGP52914.1	AGP53675.1	M271_06445	M271_10325	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	ABC transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.430
AGP52914.1	AGP53870.1	M271_06445	M271_11350	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.504
AGP52914.1	AGP54279.1	M271_06445	M271_13425	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Multidrug ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.568
AGP52914.1	AGP54972.1	M271_06445	M271_17035	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Multidrug ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.518
AGP52914.1	AGP56086.1	M271_06445	M271_22855	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.488
AGP52914.1	AGP56879.1	M271_06445	M271_27045	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Multidrug ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.514
AGP52914.1	AGP57005.1	M271_06445	M271_27700	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	ABC transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.472