(37 nodes) NADP-dependent oxidoreductase domain superfamily network (Streptomyces rapamycinicus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AGP52309.1	Aldo/keto reductase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (297 aa)
	AGP52419.1	Aldo/keto reductase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (327 aa)
	AGP52423.1	L-glyceraldehyde 3-phosphate reductase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (335 aa)
	AGP51974.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (295 aa)
	AGP52172.1	Aldo/keto reductase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (357 aa)
	AGP52213.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (156 aa)
	AGP52264.1	Oxidoreductase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (290 aa)
	AGP59827.1	D-threo-aldose 1-dehydrogenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (336 aa)
	AGP59832.1	Oxidoreductase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (274 aa)
	AGP60373.1	Oxidoreductase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (293 aa)
	AGP60644.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (280 aa)
	AGP60796.1	Aldo/keto reductase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (354 aa)
	AGP60877.1	Aldo/keto reductase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (311 aa)
	AGP60943.1	Aldo/keto reductase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (339 aa)
	AGP60960.1	Aldo/keto reductase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (346 aa)
	AGP61286.1	Aldo/keto reductase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (329 aa)
	AGP61493.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (309 aa)
	AGP52910.1	Oxidoreductase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (349 aa)
	AGP53121.1	Aldo/keto reductase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (339 aa)
	AGP53738.1	Aldo/keto reductase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (329 aa)
	AGP54148.1	Oxidoreductase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (276 aa)
	AGP54807.1	Oxidoreductase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (310 aa)
	AGP55461.1	Aldo/keto reductase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (328 aa)
	AGP56091.1	Aldo/keto reductase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (267 aa)
	AGP56146.1	NADP-dependent aryl-alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (314 aa)
	AGP56547.1	Aldehyde oxidase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (311 aa)
	AGP56930.1	Aldo/keto reductase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (355 aa)
	AGP56943.1	Aldo/keto reductase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (341 aa)
	AGP57073.1	Oxidoreductase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (331 aa)
	AGP57210.1	Aldo/keto reductase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (331 aa)
	AGP57980.1	Aldo/keto reductase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (340 aa)
	AGP58096.1	Aldo/keto reductase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (343 aa)
	AGP58781.1	Aldo/keto reductase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (326 aa)
	AGP59063.1	Aldo/keto reductase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (326 aa)
	AGP59077.1	Aldo/keto reductase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (335 aa)
	AGP59176.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (334 aa)
	AGP59726.1	Aldo/keto reductase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (328 aa)

Your Current Organism:

Streptomyces rapamycinicus

NCBI taxonomy Id: 1343740
Other names: S. rapamycinicus NRRL 5491, Streptomyces rapamycinicus NRRL 5491

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AGP51974.1	AGP52264.1	M271_01690	M271_03165	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Oxidoreductase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.913
AGP51974.1	AGP52309.1	M271_01690	M271_03395	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Aldo/keto reductase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.904
AGP51974.1	AGP56091.1	M271_01690	M271_22880	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Aldo/keto reductase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.913
AGP51974.1	AGP56146.1	M271_01690	M271_23160	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	NADP-dependent aryl-alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.488
AGP51974.1	AGP59063.1	M271_01690	M271_38355	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Aldo/keto reductase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.571
AGP51974.1	AGP60373.1	M271_01690	M271_45025	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Oxidoreductase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.460
AGP51974.1	AGP60644.1	M271_01690	M271_46400	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.470
AGP51974.1	AGP60796.1	M271_01690	M271_47165	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Aldo/keto reductase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.568
AGP51974.1	AGP60877.1	M271_01690	M271_47575	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Aldo/keto reductase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.585
AGP52172.1	AGP60644.1	M271_02700	M271_46400	Aldo/keto reductase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.467
AGP52213.1	AGP52423.1	M271_02910	M271_03965	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	L-glyceraldehyde 3-phosphate reductase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.492
AGP52213.1	AGP53121.1	M271_02910	M271_07505	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Aldo/keto reductase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.761
AGP52213.1	AGP56146.1	M271_02910	M271_23160	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	NADP-dependent aryl-alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.632
AGP52213.1	AGP59726.1	M271_02910	M271_41745	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Aldo/keto reductase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.529
AGP52213.1	AGP60644.1	M271_02910	M271_46400	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.506
AGP52264.1	AGP51974.1	M271_03165	M271_01690	Oxidoreductase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.913
AGP52264.1	AGP52309.1	M271_03165	M271_03395	Oxidoreductase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Aldo/keto reductase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.913
AGP52264.1	AGP54148.1	M271_03165	M271_12770	Oxidoreductase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Oxidoreductase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.425
AGP52264.1	AGP56091.1	M271_03165	M271_22880	Oxidoreductase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Aldo/keto reductase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.907
AGP52264.1	AGP60644.1	M271_03165	M271_46400	Oxidoreductase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.437