23 items (Streptomyces rapamycinicus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AGP53917.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (549 aa)
	AGP52273.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (510 aa)
	AGP51916.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (537 aa)
	AGP52777.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (551 aa)
	AGP53126.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (499 aa)
	AGP52754.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (543 aa)
	AGP52521.1	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (531 aa)
	AGP52497.1	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (501 aa)
	AGP54815.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (601 aa)
	AGP54840.1	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (586 aa)
	AGP55219.1	ABC transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (600 aa)
	AGP55229.1	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (534 aa)
	AGP55244.1	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (547 aa)
	AGP55246.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (671 aa)
	AGP55363.1	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (546 aa)
	AGP55440.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (528 aa)
	AGP55505.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (915 aa)
	AGP59089.1	Peptide-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (532 aa)
	AGP59090.1	Solute binding transport lipoprotein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (531 aa)
	AGP60818.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (499 aa)
	AGP61068.1	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (505 aa)
	AGP52483.1	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (498 aa)
	AGP52333.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (470 aa)

Your Current Organism:

Streptomyces rapamycinicus

NCBI taxonomy Id: 1343740
Other names: S. rapamycinicus NRRL 5491, Streptomyces rapamycinicus NRRL 5491

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structured XML interaction data, according to the 'PSI-MI' data standard

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AGP51916.1	AGP52273.1	M271_01395	M271_03210	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.548
AGP51916.1	AGP52333.1	M271_01395	M271_03515	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.570
AGP51916.1	AGP52483.1	M271_01395	M271_04270	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.579
AGP51916.1	AGP52497.1	M271_01395	M271_04340	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.573
AGP51916.1	AGP52754.1	M271_01395	M271_05640	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.551
AGP51916.1	AGP52777.1	M271_01395	M271_05755	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.716
AGP51916.1	AGP53126.1	M271_01395	M271_07530	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.532
AGP51916.1	AGP53917.1	M271_01395	M271_11590	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.801
AGP51916.1	AGP54815.1	M271_01395	M271_16240	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.463
AGP51916.1	AGP54840.1	M271_01395	M271_16365	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.571
AGP51916.1	AGP55219.1	M271_01395	M271_18310	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	ABC transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.553
AGP51916.1	AGP55229.1	M271_01395	M271_18360	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.922
AGP51916.1	AGP55244.1	M271_01395	M271_18435	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.923
AGP51916.1	AGP55246.1	M271_01395	M271_18445	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.515
AGP51916.1	AGP55363.1	M271_01395	M271_19070	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.572
AGP51916.1	AGP55440.1	M271_01395	M271_19455	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.739
AGP51916.1	AGP59089.1	M271_01395	M271_38485	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Peptide-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.569
AGP51916.1	AGP59090.1	M271_01395	M271_38490	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Solute binding transport lipoprotein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.727
AGP51916.1	AGP60818.1	M271_01395	M271_47280	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.562
AGP51916.1	AGP61068.1	M271_01395	M271_48530	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.484