(55 nodes) Starch and sucrose metabolism network (Streptomyces rapamycinicus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AGP52115.1	Endoglucanase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the glycosyl hydrolase family 6. (321 aa)
	AGP52406.1	Alpha-galactosidase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (624 aa)
	AGP52409.1	Glycosyl hydrolase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (781 aa)
	AGP52832.1	Beta-glucosidase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the glycosyl hydrolase 3 family. (761 aa)
	AGP52848.1	Beta-glucosidase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (454 aa)
	AGP53004.1	Cellulose 1,4-beta-cellobiosidase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (611 aa)
	AGP53031.1	6-phospho-beta-glucosidase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (450 aa)
	AGP53412.1	Glycoside hydrolase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the glycosyl hydrolase 5 (cellulase A) family. (646 aa)
	AGP53413.1	Beta-glucosidase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (756 aa)
	AGP53970.1	Glycosyl hydrolase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (781 aa)
	AGP54243.1	Alpha-glucosidase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (605 aa)
	AGP54292.1	Glucokinase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (384 aa)
	AGP54331.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the glycosyl hydrolase family 6. (562 aa)
	AGP54409.1	Glycogen debranching protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the glycosyl hydrolase 13 family. (714 aa)
	AGP54413.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (903 aa)
	AGP54416.1	Malto-oligosyltrehalose trehalohydrolase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (585 aa)
	AGP54681.1	Sugar hydrolase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (981 aa)
	AGP54797.1	Endoglucanase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the glycosyl hydrolase family 6. (318 aa)
	AGP54895.1	Alpha-glucan phosphorylase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (890 aa)
	glgE	Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase; Maltosyltransferase that uses maltose 1-phosphate (M1P) as the sugar donor to elongate linear or branched alpha-(1->4)-glucans. Is involved in a branched alpha-glucan biosynthetic pathway from trehalose, together with TreS, Mak and GlgB. (664 aa)
	AGP54901.1	Trehalose synthase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (581 aa)
	AGP54902.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (512 aa)
	glgB	Hypothetical protein; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily. (742 aa)
	AGP55533.1	UTP--glucose-1-phosphate uridylyltransferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (268 aa)
	AGP55639.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (310 aa)
	AGP56862.1	1,4-beta cellobiohydrolase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the glycosyl hydrolase family 6. (357 aa)
	AGP56864.1	Endo-1,4-beta-glucanase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the glycosyl hydrolase 5 (cellulase A) family. (418 aa)
	AGP57028.1	ROK family transcriptional regulator; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (319 aa)
	AGP57030.1	Trehalose phosphatase; Removes the phosphate from trehalose 6-phosphate to produce free trehalose. (283 aa)
	AGP57031.1	Alpha,alpha-trehalose-phosphate synthase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (502 aa)
	AGP57526.1	Endoglucanase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the glycosyl hydrolase family 6. (338 aa)
	AGP57620.1	Beta-glucosidase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (468 aa)
	AGP57632.1	Cellulose 1,4-beta-cellobiosidase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the glycosyl hydrolase family 6. (455 aa)
	AGP57633.1	Endo-1,4-beta-glucanase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the glycosyl hydrolase 5 (cellulase A) family. (343 aa)
	AGP57810.1	6-phospho-beta-glucosidase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (420 aa)
	AGP57820.1	4-alpha-glucanotransferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (762 aa)
	AGP58045.1	6-phospho-beta-glucosidase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (456 aa)
	AGP58084.1	Beta-glucosidase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the glycosyl hydrolase 3 family. (847 aa)
	AGP58255.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (551 aa)
	AGP58455.1	Alpha-glucosidase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (556 aa)
	AGP58463.1	Glycosidase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (462 aa)
	AGP58464.1	Alpha-1,6-glucosidase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the glycosyl hydrolase 13 family. (887 aa)
	AGP58547.1	Glucokinase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (313 aa)
	AGP58718.1	Sugar kinase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (316 aa)
	pgi	Glucose-6-phosphate isomerase; Functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the GPI family. (553 aa)
	AGP59026.1	Endoglucanase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the glycosyl hydrolase family 6. (329 aa)
	AGP59557.1	Glucose-1-phosphate cytidylyltransferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (264 aa)
	AGP59751.1	6-phospho-beta-glucosidase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (436 aa)
	AGP59864.1	Glucose-6-phosphate isomerase; Catalyzes the formation of D-fructose 6-phosphate from D-glucose 6-phosphate; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (193 aa)
	AGP59982.1	ROK family transcriptional regulator; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (325 aa)
	AGP60113.1	PTS glucose transporter subunit IIA; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (148 aa)
	AGP60401.1	Endoglucanase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (620 aa)
	AGP60403.1	Alpha-glucosidase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (532 aa)
	AGP60669.1	Glycoside hydrolase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (831 aa)
	AGP61144.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (328 aa)

Your Current Organism:

Streptomyces rapamycinicus

NCBI taxonomy Id: 1343740
Other names: S. rapamycinicus NRRL 5491, Streptomyces rapamycinicus NRRL 5491

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AGP52115.1	AGP52832.1	M271_02410	M271_06030	Endoglucanase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the glycosyl hydrolase family 6.	Beta-glucosidase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the glycosyl hydrolase 3 family.	0.687
AGP52115.1	AGP52848.1	M271_02410	M271_06110	Endoglucanase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the glycosyl hydrolase family 6.	Beta-glucosidase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.677
AGP52115.1	AGP53413.1	M271_02410	M271_08975	Endoglucanase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the glycosyl hydrolase family 6.	Beta-glucosidase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.687
AGP52115.1	AGP54681.1	M271_02410	M271_15525	Endoglucanase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the glycosyl hydrolase family 6.	Sugar hydrolase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.687
AGP52115.1	AGP57620.1	M271_02410	M271_30940	Endoglucanase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the glycosyl hydrolase family 6.	Beta-glucosidase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.677
AGP52115.1	AGP57632.1	M271_02410	M271_31000	Endoglucanase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the glycosyl hydrolase family 6.	Cellulose 1,4-beta-cellobiosidase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the glycosyl hydrolase family 6.	0.971
AGP52115.1	AGP58084.1	M271_02410	M271_33345	Endoglucanase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the glycosyl hydrolase family 6.	Beta-glucosidase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the glycosyl hydrolase 3 family.	0.687
AGP52115.1	AGP60669.1	M271_02410	M271_46530	Endoglucanase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the glycosyl hydrolase family 6.	Glycoside hydrolase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.687
AGP52406.1	AGP52832.1	M271_03880	M271_06030	Alpha-galactosidase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Beta-glucosidase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the glycosyl hydrolase 3 family.	0.774
AGP52406.1	AGP52848.1	M271_03880	M271_06110	Alpha-galactosidase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Beta-glucosidase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.650
AGP52406.1	AGP53031.1	M271_03880	M271_07045	Alpha-galactosidase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	6-phospho-beta-glucosidase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.650
AGP52406.1	AGP53413.1	M271_03880	M271_08975	Alpha-galactosidase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Beta-glucosidase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.755
AGP52406.1	AGP54243.1	M271_03880	M271_13245	Alpha-galactosidase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Alpha-glucosidase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.908
AGP52406.1	AGP54681.1	M271_03880	M271_15525	Alpha-galactosidase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Sugar hydrolase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.752
AGP52406.1	AGP54901.1	M271_03880	M271_16680	Alpha-galactosidase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Trehalose synthase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.907
AGP52406.1	AGP54902.1	M271_03880	M271_16685	Alpha-galactosidase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.900
AGP52406.1	AGP57620.1	M271_03880	M271_30940	Alpha-galactosidase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Beta-glucosidase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.650
AGP52406.1	AGP57810.1	M271_03880	M271_31920	Alpha-galactosidase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	6-phospho-beta-glucosidase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.650
AGP52406.1	AGP57820.1	M271_03880	M271_31970	Alpha-galactosidase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	4-alpha-glucanotransferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.909
AGP52406.1	AGP58045.1	M271_03880	M271_33150	Alpha-galactosidase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	6-phospho-beta-glucosidase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.650