7 items (Streptomyces rapamycinicus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AGP51928.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (572 aa)
	AGP53837.1	Phytoene synthase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (306 aa)
	AGP60916.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (302 aa)
	AGP61511.1	Phytoene synthase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (343 aa)
	AGP61512.1	Phytoene dehydrogenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (588 aa)
	AGP61514.1	Lycopene cyclase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (432 aa)
	AGP61516.1	Isorenieratene synthase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (489 aa)

Your Current Organism:

Streptomyces rapamycinicus

NCBI taxonomy Id: 1343740
Other names: S. rapamycinicus NRRL 5491, Streptomyces rapamycinicus NRRL 5491

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structured XML interaction data, according to the 'PSI-MI' data standard

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AGP51928.1	AGP61514.1	M271_01455	M271_50795	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Lycopene cyclase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.918
AGP51928.1	AGP61516.1	M271_01455	M271_50805	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Isorenieratene synthase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.913
AGP53837.1	AGP60916.1	M271_11185	M271_47770	Phytoene synthase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.924
AGP53837.1	AGP61511.1	M271_11185	M271_50780	Phytoene synthase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Phytoene synthase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.922
AGP53837.1	AGP61512.1	M271_11185	M271_50785	Phytoene synthase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Phytoene dehydrogenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.985
AGP53837.1	AGP61514.1	M271_11185	M271_50795	Phytoene synthase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Lycopene cyclase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.493
AGP53837.1	AGP61516.1	M271_11185	M271_50805	Phytoene synthase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Isorenieratene synthase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.491
AGP60916.1	AGP53837.1	M271_47770	M271_11185	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Phytoene synthase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.924
AGP60916.1	AGP61511.1	M271_47770	M271_50780	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Phytoene synthase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.920
AGP60916.1	AGP61512.1	M271_47770	M271_50785	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Phytoene dehydrogenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.982
AGP60916.1	AGP61514.1	M271_47770	M271_50795	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Lycopene cyclase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.531
AGP61511.1	AGP53837.1	M271_50780	M271_11185	Phytoene synthase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Phytoene synthase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.922
AGP61511.1	AGP60916.1	M271_50780	M271_47770	Phytoene synthase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.920
AGP61511.1	AGP61512.1	M271_50780	M271_50785	Phytoene synthase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Phytoene dehydrogenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.999
AGP61511.1	AGP61514.1	M271_50780	M271_50795	Phytoene synthase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Lycopene cyclase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.921
AGP61511.1	AGP61516.1	M271_50780	M271_50805	Phytoene synthase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Isorenieratene synthase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.798
AGP61512.1	AGP53837.1	M271_50785	M271_11185	Phytoene dehydrogenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Phytoene synthase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.985
AGP61512.1	AGP60916.1	M271_50785	M271_47770	Phytoene dehydrogenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.982
AGP61512.1	AGP61511.1	M271_50785	M271_50780	Phytoene dehydrogenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Phytoene synthase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.999
AGP61512.1	AGP61514.1	M271_50785	M271_50795	Phytoene dehydrogenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Lycopene cyclase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.996