12 items (Ascoidea rubescens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1D2V9R8	Subunit of the compass complex, which methylates histone H3 on lys 4. (332 aa)
	A0A1D2VBG7	Ssu72-like protein. (205 aa)
	A0A1D2VDL2	CPSF_A domain-containing protein. (1806 aa)
	A0A1D2VFQ0	Uncharacterized protein. (849 aa)
	A0A1D2VGX1	Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family. (328 aa)
	A0A1D2VHH1	WD40 repeat-like protein. (556 aa)
	A0A1D2VJI3	Cleavage and polyadenylation specificity factor subunit 2. (873 aa)
	A0A1D2VMV1	DWNN-domain-containing protein. (604 aa)
	A0A1D2VNE9	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. (661 aa)
	A0A1D2VQ98	Uncharacterized protein. (254 aa)
	A0A1D2VQL8	Fip1 domain-containing protein. (715 aa)
	A0A1D2VS93	Uncharacterized protein. (437 aa)

Your Current Organism:

Ascoidea rubescens

NCBI taxonomy Id: 1344418
Other names: A. rubescens DSM 1968, Ascoidea rubescens DSM 1968

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1D2V9R8	A0A1D2VBG7	Subunit of the compass complex, which methylates histone H3 on lys 4.	Ssu72-like protein.	0.995
A0A1D2V9R8	A0A1D2VDL2	Subunit of the compass complex, which methylates histone H3 on lys 4.	CPSF_A domain-containing protein.	0.993
A0A1D2V9R8	A0A1D2VFQ0	Subunit of the compass complex, which methylates histone H3 on lys 4.	Uncharacterized protein.	0.993
A0A1D2V9R8	A0A1D2VGX1	Subunit of the compass complex, which methylates histone H3 on lys 4.	Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.	0.994
A0A1D2V9R8	A0A1D2VHH1	Subunit of the compass complex, which methylates histone H3 on lys 4.	WD40 repeat-like protein.	0.993
A0A1D2V9R8	A0A1D2VJI3	Subunit of the compass complex, which methylates histone H3 on lys 4.	Cleavage and polyadenylation specificity factor subunit 2.	0.992
A0A1D2V9R8	A0A1D2VMV1	Subunit of the compass complex, which methylates histone H3 on lys 4.	DWNN-domain-containing protein.	0.990
A0A1D2V9R8	A0A1D2VNE9	Subunit of the compass complex, which methylates histone H3 on lys 4.	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	0.961
A0A1D2V9R8	A0A1D2VQ98	Subunit of the compass complex, which methylates histone H3 on lys 4.	Uncharacterized protein.	0.993
A0A1D2V9R8	A0A1D2VQL8	Subunit of the compass complex, which methylates histone H3 on lys 4.	Fip1 domain-containing protein.	0.993
A0A1D2V9R8	A0A1D2VS93	Subunit of the compass complex, which methylates histone H3 on lys 4.	Uncharacterized protein.	0.982
A0A1D2VBG7	A0A1D2V9R8	Ssu72-like protein.	Subunit of the compass complex, which methylates histone H3 on lys 4.	0.995
A0A1D2VBG7	A0A1D2VDL2	Ssu72-like protein.	CPSF_A domain-containing protein.	0.992
A0A1D2VBG7	A0A1D2VFQ0	Ssu72-like protein.	Uncharacterized protein.	0.993
A0A1D2VBG7	A0A1D2VGX1	Ssu72-like protein.	Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.	0.994
A0A1D2VBG7	A0A1D2VHH1	Ssu72-like protein.	WD40 repeat-like protein.	0.991
A0A1D2VBG7	A0A1D2VJI3	Ssu72-like protein.	Cleavage and polyadenylation specificity factor subunit 2.	0.992
A0A1D2VBG7	A0A1D2VMV1	Ssu72-like protein.	DWNN-domain-containing protein.	0.990
A0A1D2VBG7	A0A1D2VNE9	Ssu72-like protein.	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	0.966
A0A1D2VBG7	A0A1D2VQ98	Ssu72-like protein.	Uncharacterized protein.	0.994