(14 nodes) SCF ubiquitin ligase complex network (Ascoidea rubescens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1D2VRB4	Cyclin-dependent kinases regulatory subunit; Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function. (108 aa)
	A0A1D2VNQ4	E3 ubiquitin ligase SCF complex, Skp subunit; Belongs to the SKP1 family. (175 aa)
	A0A1D2VNQ2	F-box domain-containing protein. (947 aa)
	A0A1D2VMX5	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (274 aa)
	A0A1D2VLG4	Uncharacterized protein. (980 aa)
	A0A1D2VHL1	RCC1/BLIP-II protein. (662 aa)
	A0A1D2VH30	E3 ubiquitin ligase SCF complex, Skp subunit; Belongs to the SKP1 family. (170 aa)
	A0A1D2VGU6	RING/U-box. (115 aa)
	A0A1D2VB72	SCF ubiquitin ligase; Belongs to the cullin family. (766 aa)
	A0A1D2VCJ6	F-box protein five copies of the WD40 motif-containing protein, controls cell cycle function. (581 aa)
	A0A1D2VD65	F-box domain-containing protein. (805 aa)
	A0A1D2V9N4	WD40 repeat-like protein. (693 aa)
	A0A1D2VAQ0	RNI-like protein. (477 aa)
	A0A1D2VAW0	Scskp1-Sccdc4-Cpd peptide complex; Belongs to the SKP1 family. (177 aa)

Your Current Organism:

Ascoidea rubescens

NCBI taxonomy Id: 1344418
Other names: A. rubescens DSM 1968, Ascoidea rubescens DSM 1968

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1D2V9N4	A0A1D2VAQ0	WD40 repeat-like protein.	RNI-like protein.	0.849
A0A1D2V9N4	A0A1D2VAW0	WD40 repeat-like protein.	Scskp1-Sccdc4-Cpd peptide complex; Belongs to the SKP1 family.	0.935
A0A1D2V9N4	A0A1D2VB72	WD40 repeat-like protein.	SCF ubiquitin ligase; Belongs to the cullin family.	0.974
A0A1D2V9N4	A0A1D2VCJ6	WD40 repeat-like protein.	F-box protein five copies of the WD40 motif-containing protein, controls cell cycle function.	0.797
A0A1D2V9N4	A0A1D2VGU6	WD40 repeat-like protein.	RING/U-box.	0.992
A0A1D2V9N4	A0A1D2VH30	WD40 repeat-like protein.	E3 ubiquitin ligase SCF complex, Skp subunit; Belongs to the SKP1 family.	0.935
A0A1D2V9N4	A0A1D2VMX5	WD40 repeat-like protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.883
A0A1D2V9N4	A0A1D2VNQ4	WD40 repeat-like protein.	E3 ubiquitin ligase SCF complex, Skp subunit; Belongs to the SKP1 family.	0.935
A0A1D2VAQ0	A0A1D2V9N4	RNI-like protein.	WD40 repeat-like protein.	0.849
A0A1D2VAQ0	A0A1D2VAW0	RNI-like protein.	Scskp1-Sccdc4-Cpd peptide complex; Belongs to the SKP1 family.	0.935
A0A1D2VAQ0	A0A1D2VB72	RNI-like protein.	SCF ubiquitin ligase; Belongs to the cullin family.	0.990
A0A1D2VAQ0	A0A1D2VCJ6	RNI-like protein.	F-box protein five copies of the WD40 motif-containing protein, controls cell cycle function.	0.804
A0A1D2VAQ0	A0A1D2VGU6	RNI-like protein.	RING/U-box.	0.945
A0A1D2VAQ0	A0A1D2VH30	RNI-like protein.	E3 ubiquitin ligase SCF complex, Skp subunit; Belongs to the SKP1 family.	0.935
A0A1D2VAQ0	A0A1D2VMX5	RNI-like protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.554
A0A1D2VAQ0	A0A1D2VNQ2	RNI-like protein.	F-box domain-containing protein.	0.455
A0A1D2VAQ0	A0A1D2VNQ4	RNI-like protein.	E3 ubiquitin ligase SCF complex, Skp subunit; Belongs to the SKP1 family.	0.935
A0A1D2VAW0	A0A1D2V9N4	Scskp1-Sccdc4-Cpd peptide complex; Belongs to the SKP1 family.	WD40 repeat-like protein.	0.935
A0A1D2VAW0	A0A1D2VAQ0	Scskp1-Sccdc4-Cpd peptide complex; Belongs to the SKP1 family.	RNI-like protein.	0.935
A0A1D2VAW0	A0A1D2VB72	Scskp1-Sccdc4-Cpd peptide complex; Belongs to the SKP1 family.	SCF ubiquitin ligase; Belongs to the cullin family.	0.924