(37 nodes) Establishment of cell polarity network (Ascoidea rubescens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1D2VGL2	CAP-Gly domain-containing protein. (1397 aa)
	A0A1D2V8L0	Uncharacterized protein. (1307 aa)
	A0A1D2V927	ADP-ribosylation factor; Belongs to the small GTPase superfamily. Arf family. (182 aa)
	A0A1D2V930	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (626 aa)
	A0A1D2V9E5	Uncharacterized protein. (171 aa)
	A0A1D2V9Y6	Uncharacterized protein. (454 aa)
	A0A1D2VAA7	RGS domain-containing protein. (454 aa)
	A0A1D2VAJ3	RGS domain-containing protein. (521 aa)
	A0A1D2VAQ1	Cell division cycle-related protein. (191 aa)
	A0A1D2VAQ4	WD40 repeat-like protein. (919 aa)
	A0A1D2VBX3	WSC domain-containing protein. (227 aa)
	A0A1D2VBY0	Uncharacterized protein. (1107 aa)
	A0A1D2VC37	Putative coated vesicle protein. (124 aa)
	A0A1D2VC95	Uncharacterized protein. (1642 aa)
	A0A1D2VCG7	Kinase-like protein. (280 aa)
	A0A1D2VCT6	Rho GTPase activation protein. (748 aa)
	A0A1D2VCU5	Uncharacterized protein. (4919 aa)
	A0A1D2VDI2	RhoGAP-domain-containing protein. (673 aa)
	A0A1D2VEE3	Uncharacterized protein. (1400 aa)
	A0A1D2VFM4	Non-specific serine/threonine protein kinase. (605 aa)
	A0A1D2VG45	EF-hand. (313 aa)
	A0A1D2VGI7	Dynein regulator. (521 aa)
	A0A1D2VGX4	Uncharacterized protein. (927 aa)
	A0A1D2VIC2	EF-hand. (420 aa)
	A0A1D2VKG5	Kinase subdomain-containing protein. (4455 aa)
	A0A1D2VKV2	EF-hand. (181 aa)
	A0A1D2VKX7	Spindle pole body interacting protein. (980 aa)
	A0A1D2VL02	RhoGEF-domain-containing protein. (656 aa)
	A0A1D2VM19	Actin-2; Belongs to the actin family. (390 aa)
	A0A1D2VM31	EF-hand. (182 aa)
	A0A1D2VME2	Zds_C domain-containing protein. (1705 aa)
	A0A1D2VML9	Uncharacterized protein. (521 aa)
	A0A1D2VNP5	EF-hand. (168 aa)
	A0A1D2VP97	CAP-Gly domain-containing protein. (1408 aa)
	A0A1D2VQH0	WD_REPEATS_REGION domain-containing protein. (1027 aa)
	A0A1D2VRA0	Actin/actin-like protein. (376 aa)
	A0A1D2VSC2	AIP3-domain-containing protein. (653 aa)

Your Current Organism:

Ascoidea rubescens

NCBI taxonomy Id: 1344418
Other names: A. rubescens DSM 1968, Ascoidea rubescens DSM 1968

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1D2V8L0	A0A1D2V9Y6	Uncharacterized protein.	Uncharacterized protein.	0.425
A0A1D2V927	A0A1D2VAQ1	ADP-ribosylation factor; Belongs to the small GTPase superfamily. Arf family.	Cell division cycle-related protein.	0.707
A0A1D2V927	A0A1D2VCT6	ADP-ribosylation factor; Belongs to the small GTPase superfamily. Arf family.	Rho GTPase activation protein.	0.679
A0A1D2V927	A0A1D2VDI2	ADP-ribosylation factor; Belongs to the small GTPase superfamily. Arf family.	RhoGAP-domain-containing protein.	0.592
A0A1D2V927	A0A1D2VGI7	ADP-ribosylation factor; Belongs to the small GTPase superfamily. Arf family.	Dynein regulator.	0.409
A0A1D2V927	A0A1D2VKG5	ADP-ribosylation factor; Belongs to the small GTPase superfamily. Arf family.	Kinase subdomain-containing protein.	0.533
A0A1D2V927	A0A1D2VL02	ADP-ribosylation factor; Belongs to the small GTPase superfamily. Arf family.	RhoGEF-domain-containing protein.	0.584
A0A1D2V927	A0A1D2VM19	ADP-ribosylation factor; Belongs to the small GTPase superfamily. Arf family.	Actin-2; Belongs to the actin family.	0.586
A0A1D2V927	A0A1D2VRA0	ADP-ribosylation factor; Belongs to the small GTPase superfamily. Arf family.	Actin/actin-like protein.	0.588
A0A1D2V930	A0A1D2VGI7	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Dynein regulator.	0.570
A0A1D2V930	A0A1D2VGL2	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	CAP-Gly domain-containing protein.	0.680
A0A1D2V930	A0A1D2VKG5	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Kinase subdomain-containing protein.	0.847
A0A1D2V930	A0A1D2VM19	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Actin-2; Belongs to the actin family.	0.563
A0A1D2V930	A0A1D2VP97	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	CAP-Gly domain-containing protein.	0.593
A0A1D2V930	A0A1D2VRA0	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Actin/actin-like protein.	0.533
A0A1D2V9E5	A0A1D2V9Y6	Uncharacterized protein.	Uncharacterized protein.	0.484
A0A1D2V9E5	A0A1D2VAQ1	Uncharacterized protein.	Cell division cycle-related protein.	0.769
A0A1D2V9E5	A0A1D2VC95	Uncharacterized protein.	Uncharacterized protein.	0.691
A0A1D2V9E5	A0A1D2VCG7	Uncharacterized protein.	Kinase-like protein.	0.691
A0A1D2V9E5	A0A1D2VCT6	Uncharacterized protein.	Rho GTPase activation protein.	0.912