36 items (Ascoidea rubescens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1D2VAI2	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family. (202 aa)
	TIF6	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export; Belongs to the eIF-6 family. (245 aa)
	A0A1D2VAR1	Uncharacterized protein. (226 aa)
	A0A1D2VAT2	Putative ribosomal RNA-processing protein. (275 aa)
	A0A1D2VIR7	Ebp2-domain-containing protein. (373 aa)
	A0A1D2VC68	Ribosomal protein L1. (638 aa)
	A0A1D2VCE6	Bud site selection protein 20. (147 aa)
	A0A1D2VCX6	NOL1/NOP2/sun family putative RNA met; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (641 aa)
	A0A1D2VD68	Putative nucleolar ribosomal biogenesis factor RPF1p. (289 aa)
	A0A1D2VEF5	C2H2-type domain-containing protein. (454 aa)
	YTM1	Ribosome biogenesis protein YTM1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (466 aa)
	A0A1D2V8H6	Uncharacterized protein. (160 aa)
	A0A1D2V8E7	NOC3p-domain-containing protein. (762 aa)
	A0A1D2VES5	Mak16 protein. (308 aa)
	A0A1D2VRL6	Noc2-domain-containing protein. (776 aa)
	A0A1D2VJK4	Uncharacterized protein. (185 aa)
	NOP7	Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (611 aa)
	A0A1D2VL57	Ribosome biogenesis ATPase RIX7. (820 aa)
	A0A1D2VLI5	CBF-domain-containing protein. (1046 aa)
	A0A1D2VLK9	Uncharacterized protein. (99 aa)
	A0A1D2VC05	Peptidase_M24 domain-containing protein. (557 aa)
	A0A1D2VC39	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily. (637 aa)
	A0A1D2VQA6	Brix-domain-containing protein. (300 aa)
	A0A1D2VPZ6	Midasin; Nuclear chaperone required for maturation and nuclear export of pre-60S ribosome subunits; Belongs to the midasin family. (4646 aa)
	SPB1	AdoMet-dependent rRNA methyltransferase SPB1; Required for proper assembly of pre-ribosomal particles during the biogenesis of the 60S ribosomal subunit; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily. (818 aa)
	A0A1D2VMH1	Rrp15p-domain-containing protein. (189 aa)
	A0A1D2VBG8	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes. (241 aa)
	A0A1D2VLW0	RNA-binding domain-containing protein. (310 aa)
	A0A1D2VLV2	Brix-domain-containing protein. (435 aa)
	ERB1	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (722 aa)
	A0A1D2VQE8	60S ribosome subunit biogenesis protein NIP7; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family. (181 aa)
	A0A1D2VIV9	P-loop containing nucleoside triphosphate hydrolase protein. (533 aa)
	A0A1D2VH08	AAA-domain-containing protein. (855 aa)
	A0A1D2VGS0	Las1-domain-containing protein. (583 aa)
	A0A1D2VG54	ARM repeat-containing protein. (661 aa)
	A0A1D2VG52	C2H2-type domain-containing protein. (465 aa)

Your Current Organism:

Ascoidea rubescens

NCBI taxonomy Id: 1344418
Other names: A. rubescens DSM 1968, Ascoidea rubescens DSM 1968

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1D2V8E7	A0A1D2V8H6	A0A1D2V8E7	A0A1D2V8H6	NOC3p-domain-containing protein.	Uncharacterized protein.	0.964
A0A1D2V8E7	A0A1D2VAI2	A0A1D2V8E7	A0A1D2VAI2	NOC3p-domain-containing protein.	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.	0.866
A0A1D2V8E7	A0A1D2VAR1	A0A1D2V8E7	A0A1D2VAR1	NOC3p-domain-containing protein.	Uncharacterized protein.	0.867
A0A1D2V8E7	A0A1D2VAT2	A0A1D2V8E7	A0A1D2VAT2	NOC3p-domain-containing protein.	Putative ribosomal RNA-processing protein.	0.967
A0A1D2V8E7	A0A1D2VBG8	A0A1D2V8E7	A0A1D2VBG8	NOC3p-domain-containing protein.	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	0.955
A0A1D2V8E7	A0A1D2VC05	A0A1D2V8E7	A0A1D2VC05	NOC3p-domain-containing protein.	Peptidase_M24 domain-containing protein.	0.428
A0A1D2V8E7	A0A1D2VC39	A0A1D2V8E7	A0A1D2VC39	NOC3p-domain-containing protein.	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	0.994
A0A1D2V8E7	A0A1D2VC68	A0A1D2V8E7	A0A1D2VC68	NOC3p-domain-containing protein.	Ribosomal protein L1.	0.974
A0A1D2V8E7	A0A1D2VCX6	A0A1D2V8E7	A0A1D2VCX6	NOC3p-domain-containing protein.	NOL1/NOP2/sun family putative RNA met; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	0.990
A0A1D2V8E7	A0A1D2VD68	A0A1D2V8E7	A0A1D2VD68	NOC3p-domain-containing protein.	Putative nucleolar ribosomal biogenesis factor RPF1p.	0.920
A0A1D2V8E7	A0A1D2VEF5	A0A1D2V8E7	A0A1D2VEF5	NOC3p-domain-containing protein.	C2H2-type domain-containing protein.	0.563
A0A1D2V8E7	A0A1D2VES5	A0A1D2V8E7	A0A1D2VES5	NOC3p-domain-containing protein.	Mak16 protein.	0.992
A0A1D2V8E7	A0A1D2VG54	A0A1D2V8E7	A0A1D2VG54	NOC3p-domain-containing protein.	ARM repeat-containing protein.	0.869
A0A1D2V8E7	A0A1D2VIR7	A0A1D2V8E7	A0A1D2VIR7	NOC3p-domain-containing protein.	Ebp2-domain-containing protein.	0.973
A0A1D2V8E7	A0A1D2VIV9	A0A1D2V8E7	A0A1D2VIV9	NOC3p-domain-containing protein.	P-loop containing nucleoside triphosphate hydrolase protein.	0.993
A0A1D2V8E7	A0A1D2VL57	A0A1D2V8E7	A0A1D2VL57	NOC3p-domain-containing protein.	Ribosome biogenesis ATPase RIX7.	0.823
A0A1D2V8E7	A0A1D2VLI5	A0A1D2V8E7	A0A1D2VLI5	NOC3p-domain-containing protein.	CBF-domain-containing protein.	0.964
A0A1D2V8E7	A0A1D2VLK9	A0A1D2V8E7	A0A1D2VLK9	NOC3p-domain-containing protein.	Uncharacterized protein.	0.907
A0A1D2V8E7	A0A1D2VLV2	A0A1D2V8E7	A0A1D2VLV2	NOC3p-domain-containing protein.	Brix-domain-containing protein.	0.773
A0A1D2V8E7	A0A1D2VLW0	A0A1D2V8E7	A0A1D2VLW0	NOC3p-domain-containing protein.	RNA-binding domain-containing protein.	0.988