(45 nodes) Cell division site network (Ascoidea rubescens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1D2VH86	Septin; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family. (452 aa)
	A0A1D2VHE2	Uncharacterized protein. (1148 aa)
	A0A1D2VJD6	Uncharacterized protein. (2154 aa)
	A0A1D2VK72	Reduced viability upon starvation protein. (442 aa)
	A0A1D2VKB7	BAR-domain-containing protein. (435 aa)
	A0A1D2VKJ0	Rho GTPase activation protein. (692 aa)
	A0A1D2VKS2	Septin-domain-containing protein; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family. (324 aa)
	A0A1D2VKW7	Septin; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family. (403 aa)
	A0A1D2VLK4	SH3 domain-containing protein. (1043 aa)
	A0A1D2VM07	Cell division/GTP binding protein; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family. (316 aa)
	A0A1D2VMB3	HCP-like protein. (256 aa)
	A0A1D2VML2	EF-hand protein. (142 aa)
	A0A1D2VML6	Cell division control protein 3; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family. (407 aa)
	A0A1D2VMS7	Uncharacterized protein. (543 aa)
	A0A1D2VMZ0	Uncharacterized protein. (525 aa)
	A0A1D2VN25	SH3 domain-containing protein. (752 aa)
	A0A1D2VN40	Uncharacterized protein. (522 aa)
	A0A1D2VNZ4	Uncharacterized protein. (123 aa)
	A0A1D2VP43	Uncharacterized protein. (237 aa)
	A0A1D2VP89	Bbc1 Sh3 domain complexed with A peptide from Las17. (62 aa)
	A0A1D2VQL6	DH domain-containing protein. (489 aa)
	A0A1D2VQM2	Pali-domain-containing protein. (698 aa)
	A0A1D2VQW9	Septin; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family. (415 aa)
	A0A1D2VSE4	C2 domain-containing protein. (606 aa)
	A0A1D2VB18	RhoGAP-domain-containing protein. (193 aa)
	A0A1D2VAQ0	RNI-like protein. (477 aa)
	A0A1D2V9Y6	Uncharacterized protein. (454 aa)
	A0A1D2V9Z1	Uncharacterized protein. (161 aa)
	A0A1D2VB67	LIM zinc-binding domain-containing protein. (120 aa)
	A0A1D2VBC9	Glycoside hydrolase family 16 protein. (291 aa)
	A0A1D2VBD2	Uncharacterized protein. (249 aa)
	A0A1D2VBY0	Uncharacterized protein. (1107 aa)
	A0A1D2VC03	Uncharacterized protein. (1802 aa)
	A0A1D2VCQ5	Mov34-domain-containing protein. (711 aa)
	A0A1D2VCR4	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (1880 aa)
	A0A1D2VCU5	Uncharacterized protein. (4919 aa)
	A0A1D2VCW5	Septin; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family. (515 aa)
	A0A1D2VCX4	Uncharacterized protein. (541 aa)
	A0A1D2VDF1	Uncharacterized protein. (1712 aa)
	A0A1D2VE90	Uncharacterized protein. (161 aa)
	A0A1D2VEM6	Uncharacterized protein. (703 aa)
	A0A1D2VFM4	Non-specific serine/threonine protein kinase. (605 aa)
	A0A1D2VG22	MHD domain-containing protein. (1097 aa)
	A0A1D2VG81	PRMT5-domain-containing protein. (975 aa)
	A0A1D2VGX1	Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family. (328 aa)

Your Current Organism:

Ascoidea rubescens

NCBI taxonomy Id: 1344418
Other names: A. rubescens DSM 1968, Ascoidea rubescens DSM 1968

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1D2V9Y6	A0A1D2VQL6	Uncharacterized protein.	DH domain-containing protein.	0.472
A0A1D2V9Z1	A0A1D2VB18	Uncharacterized protein.	RhoGAP-domain-containing protein.	0.993
A0A1D2V9Z1	A0A1D2VB67	Uncharacterized protein.	LIM zinc-binding domain-containing protein.	0.993
A0A1D2V9Z1	A0A1D2VC03	Uncharacterized protein.	Uncharacterized protein.	0.611
A0A1D2V9Z1	A0A1D2VCR4	Uncharacterized protein.	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.847
A0A1D2V9Z1	A0A1D2VDF1	Uncharacterized protein.	Uncharacterized protein.	0.611
A0A1D2V9Z1	A0A1D2VEM6	Uncharacterized protein.	Uncharacterized protein.	0.804
A0A1D2V9Z1	A0A1D2VHE2	Uncharacterized protein.	Uncharacterized protein.	0.749
A0A1D2V9Z1	A0A1D2VJD6	Uncharacterized protein.	Uncharacterized protein.	0.486
A0A1D2V9Z1	A0A1D2VML2	Uncharacterized protein.	EF-hand protein.	0.746
A0A1D2VAQ0	A0A1D2VEM6	RNI-like protein.	Uncharacterized protein.	0.665
A0A1D2VB18	A0A1D2V9Z1	RhoGAP-domain-containing protein.	Uncharacterized protein.	0.993
A0A1D2VB18	A0A1D2VB67	RhoGAP-domain-containing protein.	LIM zinc-binding domain-containing protein.	0.990
A0A1D2VB18	A0A1D2VC03	RhoGAP-domain-containing protein.	Uncharacterized protein.	0.693
A0A1D2VB18	A0A1D2VDF1	RhoGAP-domain-containing protein.	Uncharacterized protein.	0.693
A0A1D2VB18	A0A1D2VE90	RhoGAP-domain-containing protein.	Uncharacterized protein.	0.993
A0A1D2VB18	A0A1D2VEM6	RhoGAP-domain-containing protein.	Uncharacterized protein.	0.772
A0A1D2VB18	A0A1D2VHE2	RhoGAP-domain-containing protein.	Uncharacterized protein.	0.633
A0A1D2VB18	A0A1D2VJD6	RhoGAP-domain-containing protein.	Uncharacterized protein.	0.864
A0A1D2VB18	A0A1D2VLK4	RhoGAP-domain-containing protein.	SH3 domain-containing protein.	0.482