23 items (Ascoidea rubescens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1D2V917	Putative peroxisomal hydratase-dehydrogenase-epimerase. (920 aa)
	A0A1D2VAJ2	Uncharacterized protein. (472 aa)
	A0A1D2VAP9	Uncharacterized protein. (1370 aa)
	A0A1D2VD09	Uncharacterized protein; Belongs to the OSBP family. (862 aa)
	A0A1D2VDE7	Uncharacterized protein. (360 aa)
	A0A1D2VFN2	Uncharacterized protein. (1629 aa)
	A0A1D2VGZ2	Thioesterase/thiol ester dehydrase-isomerase. (342 aa)
	A0A1D2VH09	Thioesterase/thiol ester dehydrase-isomerase. (332 aa)
	A0A1D2VH92	Putative oleate-induced peroxisomal protein. (135 aa)
	A0A1D2VHB9	Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family. (291 aa)
	A0A1D2VHV1	Aldo/keto reductase. (283 aa)
	A0A1D2VJJ0	Aldo/keto reductase. (307 aa)
	A0A1D2VK44	CoA-transferase family III. (584 aa)
	A0A1D2VJM3	Thioesterase/thiol ester dehydrase-isomerase. (351 aa)
	A0A1D2VK37	CoA-transferase family III. (562 aa)
	A0A1D2VSC0	Uncharacterized protein. (752 aa)
	A0A1D2VR06	Oxysterol-binding protein; Belongs to the OSBP family. (510 aa)
	A0A1D2VQP2	Aldo/keto reductase. (228 aa)
	A0A1D2VQ69	Aldo/keto reductase. (285 aa)
	A0A1D2VNR9	Aldose reductase. (326 aa)
	A0A1D2VLC3	Uncharacterized protein. (1189 aa)
	A0A1D2VL07	Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family. (320 aa)
	A0A1D2VKD8	Uncharacterized protein; Belongs to the OSBP family. (1228 aa)

Your Current Organism:

Ascoidea rubescens

NCBI taxonomy Id: 1344418
Other names: A. rubescens DSM 1968, Ascoidea rubescens DSM 1968

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1D2V917	A0A1D2VDE7	Putative peroxisomal hydratase-dehydrogenase-epimerase.	Uncharacterized protein.	0.657
A0A1D2V917	A0A1D2VGZ2	Putative peroxisomal hydratase-dehydrogenase-epimerase.	Thioesterase/thiol ester dehydrase-isomerase.	0.599
A0A1D2V917	A0A1D2VH09	Putative peroxisomal hydratase-dehydrogenase-epimerase.	Thioesterase/thiol ester dehydrase-isomerase.	0.599
A0A1D2V917	A0A1D2VH92	Putative peroxisomal hydratase-dehydrogenase-epimerase.	Putative oleate-induced peroxisomal protein.	0.976
A0A1D2V917	A0A1D2VJM3	Putative peroxisomal hydratase-dehydrogenase-epimerase.	Thioesterase/thiol ester dehydrase-isomerase.	0.599
A0A1D2V917	A0A1D2VK37	Putative peroxisomal hydratase-dehydrogenase-epimerase.	CoA-transferase family III.	0.657
A0A1D2V917	A0A1D2VK44	Putative peroxisomal hydratase-dehydrogenase-epimerase.	CoA-transferase family III.	0.657
A0A1D2VAJ2	A0A1D2VHV1	Uncharacterized protein.	Aldo/keto reductase.	0.583
A0A1D2VAJ2	A0A1D2VQ69	Uncharacterized protein.	Aldo/keto reductase.	0.583
A0A1D2VAP9	A0A1D2VLC3	Uncharacterized protein.	Uncharacterized protein.	0.772
A0A1D2VD09	A0A1D2VKD8	Uncharacterized protein; Belongs to the OSBP family.	Uncharacterized protein; Belongs to the OSBP family.	0.469
A0A1D2VD09	A0A1D2VR06	Uncharacterized protein; Belongs to the OSBP family.	Oxysterol-binding protein; Belongs to the OSBP family.	0.425
A0A1D2VDE7	A0A1D2V917	Uncharacterized protein.	Putative peroxisomal hydratase-dehydrogenase-epimerase.	0.657
A0A1D2VDE7	A0A1D2VH92	Uncharacterized protein.	Putative oleate-induced peroxisomal protein.	0.769
A0A1D2VFN2	A0A1D2VLC3	Uncharacterized protein.	Uncharacterized protein.	0.773
A0A1D2VGZ2	A0A1D2V917	Thioesterase/thiol ester dehydrase-isomerase.	Putative peroxisomal hydratase-dehydrogenase-epimerase.	0.599
A0A1D2VGZ2	A0A1D2VH92	Thioesterase/thiol ester dehydrase-isomerase.	Putative oleate-induced peroxisomal protein.	0.860
A0A1D2VH09	A0A1D2V917	Thioesterase/thiol ester dehydrase-isomerase.	Putative peroxisomal hydratase-dehydrogenase-epimerase.	0.599
A0A1D2VH09	A0A1D2VH92	Thioesterase/thiol ester dehydrase-isomerase.	Putative oleate-induced peroxisomal protein.	0.860
A0A1D2VH92	A0A1D2V917	Putative oleate-induced peroxisomal protein.	Putative peroxisomal hydratase-dehydrogenase-epimerase.	0.976