12 items (Ascoidea rubescens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1D2VAV0	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (96 aa)
	A0A1D2VHV4	Uncharacterized protein. (561 aa)
	A0A1D2VI26	YjeF N-terminal domain-like protein. (705 aa)
	A0A1D2VJJ4	DCP2-domain-containing protein. (211 aa)
	LSM3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (92 aa)
	A0A1D2VJV7	PH domain-like protein. (176 aa)
	LSM4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (181 aa)
	A0A1D2VMC6	U6 snRNA-associated Sm-like protein LSm7. (99 aa)
	LSM1	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation. (142 aa)
	A0A1D2VKR0	Sm domain-containing protein. (95 aa)
	A0A1D2VAD2	DEAD-domain-containing protein; Belongs to the DEAD box helicase family. (624 aa)
	LSM5	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (84 aa)

Your Current Organism:

Ascoidea rubescens

NCBI taxonomy Id: 1344418
Other names: A. rubescens DSM 1968, Ascoidea rubescens DSM 1968

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1D2VAD2	A0A1D2VAV0	A0A1D2VAD2	A0A1D2VAV0	DEAD-domain-containing protein; Belongs to the DEAD box helicase family.	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.866
A0A1D2VAD2	A0A1D2VHV4	A0A1D2VAD2	A0A1D2VHV4	DEAD-domain-containing protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.995
A0A1D2VAD2	A0A1D2VI26	A0A1D2VAD2	A0A1D2VI26	DEAD-domain-containing protein; Belongs to the DEAD box helicase family.	YjeF N-terminal domain-like protein.	0.999
A0A1D2VAD2	A0A1D2VJJ4	A0A1D2VAD2	A0A1D2VJJ4	DEAD-domain-containing protein; Belongs to the DEAD box helicase family.	DCP2-domain-containing protein.	0.999
A0A1D2VAD2	A0A1D2VJV7	A0A1D2VAD2	A0A1D2VJV7	DEAD-domain-containing protein; Belongs to the DEAD box helicase family.	PH domain-like protein.	0.999
A0A1D2VAD2	A0A1D2VKR0	A0A1D2VAD2	A0A1D2VKR0	DEAD-domain-containing protein; Belongs to the DEAD box helicase family.	Sm domain-containing protein.	0.790
A0A1D2VAD2	A0A1D2VMC6	A0A1D2VAD2	A0A1D2VMC6	DEAD-domain-containing protein; Belongs to the DEAD box helicase family.	U6 snRNA-associated Sm-like protein LSm7.	0.994
A0A1D2VAD2	LSM1	A0A1D2VAD2	A0A1D2VJW3	DEAD-domain-containing protein; Belongs to the DEAD box helicase family.	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	0.995
A0A1D2VAD2	LSM3	A0A1D2VAD2	A0A1D2VJU6	DEAD-domain-containing protein; Belongs to the DEAD box helicase family.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.841
A0A1D2VAD2	LSM4	A0A1D2VAD2	A0A1D2VPB6	DEAD-domain-containing protein; Belongs to the DEAD box helicase family.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.929
A0A1D2VAD2	LSM5	A0A1D2VAD2	A0A1D2VPY9	DEAD-domain-containing protein; Belongs to the DEAD box helicase family.	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	0.729
A0A1D2VAV0	A0A1D2VAD2	A0A1D2VAV0	A0A1D2VAD2	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	DEAD-domain-containing protein; Belongs to the DEAD box helicase family.	0.866
A0A1D2VAV0	A0A1D2VHV4	A0A1D2VAV0	A0A1D2VHV4	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Uncharacterized protein.	0.999
A0A1D2VAV0	A0A1D2VI26	A0A1D2VAV0	A0A1D2VI26	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	YjeF N-terminal domain-like protein.	0.863
A0A1D2VAV0	A0A1D2VJJ4	A0A1D2VAV0	A0A1D2VJJ4	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	DCP2-domain-containing protein.	0.865
A0A1D2VAV0	A0A1D2VJV7	A0A1D2VAV0	A0A1D2VJV7	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	PH domain-like protein.	0.834
A0A1D2VAV0	A0A1D2VKR0	A0A1D2VAV0	A0A1D2VKR0	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Sm domain-containing protein.	0.999
A0A1D2VAV0	A0A1D2VMC6	A0A1D2VAV0	A0A1D2VMC6	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm7.	0.999
A0A1D2VAV0	LSM1	A0A1D2VAV0	A0A1D2VJW3	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	0.999
A0A1D2VAV0	LSM3	A0A1D2VAV0	A0A1D2VJU6	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999