(103 nodes) Spliceosome network (Ascoidea rubescens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1D2V8G4	RNA-binding domain-containing protein. (109 aa)
	A0A1D2V8H5	Uncharacterized protein. (593 aa)
	A0A1D2V9A5	Mitochondrial zinc maintenance protein 1, mitochondrial. (121 aa)
	A0A1D2V9B2	G-patch domain-containing protein. (779 aa)
	A0A1D2V9J6	P68 RNA helicase; Belongs to the DEAD box helicase family. (543 aa)
	A0A1D2VAF7	Uncharacterized protein. (291 aa)
	A0A1D2VAQ8	Small nuclear ribonucleoprotein G. (78 aa)
	A0A1D2VAU9	Prp18-domain-containing protein. (261 aa)
	A0A1D2VAV0	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (96 aa)
	A0A1D2VBE0	WD40 repeat-like protein. (377 aa)
	A0A1D2VBE9	PWI domain-containing protein. (851 aa)
	A0A1D2VBG1	Uncharacterized protein. (503 aa)
	A0A1D2VBL6	Pre-mRNA splicing factor rse1. (1221 aa)
	A0A1D2VBN0	YGL120Cp-like protein. (629 aa)
	A0A1D2VBN9	Sm-like ribonucleo protein. (103 aa)
	A0A1D2VBU2	Uncharacterized protein. (268 aa)
	A0A1D2VBV0	G-patch_2 domain-containing protein. (235 aa)
	A0A1D2VBX0	RRM domain-containing protein. (341 aa)
	A0A1D2VC20	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (89 aa)
	A0A1D2VC26	SURP motif domain-containing protein. (458 aa)
	A0A1D2VC42	P-loop containing nucleoside triphosphate hydrolase protein. (1462 aa)
	A0A1D2VCE0	Nucleolar protein required for maturation of 18S rRNA; Belongs to the DEAD box helicase family. (396 aa)
	A0A1D2VCL8	Uncharacterized protein. (551 aa)
	A0A1D2VCM6	P-loop containing nucleoside triphosphate hydrolase protein; Belongs to the DEAD box helicase family. (600 aa)
	A0A1D2VCP4	Uncharacterized protein. (1054 aa)
	A0A1D2VCV0	U1-type domain-containing protein. (234 aa)
	A0A1D2VCZ8	ARM repeat-containing protein. (885 aa)
	A0A1D2VD69	WD40 repeat-like protein. (323 aa)
	A0A1D2VDT0	Uncharacterized protein. (358 aa)
	A0A1D2VDU3	Cysteine proteinase. (495 aa)
	A0A1D2VE50	HCP-like protein. (726 aa)
	A0A1D2VEA8	Splicing factor 3B subunit 5/RDS3 complex subunit 10. (85 aa)
	A0A1D2VEM4	Thioredoxin-like protein. (265 aa)
	A0A1D2VES1	Matrin-type domain-containing protein. (592 aa)
	A0A1D2VEZ4	RNA-dependent ATPase RNA helicase. (2144 aa)
	A0A1D2VFE6	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (127 aa)
	A0A1D2VFG7	Small nuclear ribonucleoprotein Sm D2. (115 aa)
	A0A1D2VFL7	Actin-like ATPase domain-containing protein; Belongs to the heat shock protein 70 family. (548 aa)
	A0A1D2VFX3	Uncharacterized protein. (1036 aa)
	A0A1D2VG70	WD40 repeat-like protein. (319 aa)
	A0A1D2VGS6	Prp19-domain-containing protein. (140 aa)
	A0A1D2VGW5	FF domain-containing protein. (356 aa)
	A0A1D2VH58	Heat shock protein 70; Belongs to the heat shock protein 70 family. (653 aa)
	A0A1D2VHK9	RRM domain-containing protein. (235 aa)
	A0A1D2VHQ3	P-loop containing nucleoside triphosphate hydrolase protein. (449 aa)
	A0A1D2VI34	Spliceosomal protein DIB1; Essential role in pre-mRNA splicing. Also essential for entry into mitosis (G2/M progression) as well as for chromosome segregation during mitosis; Belongs to the DIM1 family. (143 aa)
	A0A1D2VI40	G10 protein. (149 aa)
	A0A1D2VI48	Uncharacterized protein. (221 aa)
	A0A1D2VIB5	Uncharacterized protein. (662 aa)
	A0A1D2VJ63	EFG_IV domain-containing protein. (744 aa)
	A0A1D2VJ88	Heat shock protein 70. (437 aa)
	A0A1D2VJN1	LSM-domain-containing protein. (125 aa)
	A0A1D2VJQ9	Uncharacterized protein. (1131 aa)
	LSM3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (92 aa)
	A0A1D2VJW0	Nop domain-containing protein. (533 aa)
	A0A1D2VJX6	RNA-binding domain-containing protein. (248 aa)
	A0A1D2VK89	Uncharacterized protein. (443 aa)
	A0A1D2VKE8	Potassium/sodium eff; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. (1078 aa)
	A0A1D2VKH6	RNA-binding domain-containing protein. (311 aa)
	A0A1D2VKN5	WD40 repeat-like protein. (429 aa)
	A0A1D2VKR0	Sm domain-containing protein. (95 aa)
	A0A1D2VKR8	PROCN-domain-containing protein. (2419 aa)
	A0A1D2VKW9	RRM domain-containing protein. (629 aa)
	A0A1D2VL08	Zf-U1-domain-containing protein. (142 aa)
	A0A1D2VL28	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family. (126 aa)
	A0A1D2VL33	WD40 repeat-like protein. (494 aa)
	A0A1D2VL84	Heat shock 70 kDa protein; Belongs to the heat shock protein 70 family. (645 aa)
	A0A1D2VLG0	CCHC-type domain-containing protein. (475 aa)
	A0A1D2VLK2	Uncharacterized protein. (609 aa)
	A0A1D2VLV7	Heat shock protein 70; Belongs to the heat shock protein 70 family. (613 aa)
	A0A1D2VM04	Rick_17kDa_Anti domain-containing protein. (163 aa)
	A0A1D2VM12	Rick_17kDa_Anti domain-containing protein. (179 aa)
	A0A1D2VM55	Uncharacterized protein. (1304 aa)
	A0A1D2VMC6	U6 snRNA-associated Sm-like protein LSm7. (99 aa)
	A0A1D2VMD0	Uncharacterized protein. (235 aa)
	A0A1D2VMK2	Cyclophilin-like protein. (408 aa)
	A0A1D2VMP2	Uncharacterized protein. (191 aa)
	A0A1D2VMU7	P-loop containing nucleoside triphosphate hydrolase protein; Belongs to the DEAD box helicase family. (431 aa)
	A0A1D2VN83	ArAE_2_N domain-containing protein. (1348 aa)
	A0A1D2VNF7	Nuclear cap-binding protein subunit 2. (134 aa)
	A0A1D2VNJ1	P-loop containing nucleoside triphosphate hydrolase protein. (1064 aa)
	A0A1D2VNP3	RRM domain-containing protein. (109 aa)
	A0A1D2VNY9	PHF5-like protein. (106 aa)
	LSM8	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (96 aa)
	A0A1D2VP21	DUF382-domain-containing protein. (615 aa)
	A0A1D2VPB0	RRM domain-containing protein. (265 aa)
	LSM4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (181 aa)
	A0A1D2VPS1	DUF747-domain-containing protein. (694 aa)
	LSM5	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (84 aa)
	A0A1D2VQ10	Uncharacterized protein. (1469 aa)
	A0A1D2VQ29	Uncharacterized protein. (523 aa)
	A0A1D2VQ30	PRP3-domain-containing protein. (484 aa)
	A0A1D2VQ78	PRP38-domain-containing protein. (214 aa)
	A0A1D2VQI8	Small nuclear ribonucleoprotein Sm D3. (100 aa)
	A0A1D2VQL5	SKIP_SNW domain-containing protein. (449 aa)
	A0A1D2VQR3	Isy1-domain-containing protein. (322 aa)
	A0A1D2VQT0	Uncharacterized protein. (153 aa)
	A0A1D2VR13	C2H2-type domain-containing protein. (243 aa)
	A0A1D2VRM5	Protein prenylyltransferase. (991 aa)
	A0A1D2VS36	YBR122Cp-like protein. (159 aa)
	A0A1D2VS40	DEAD-domain-containing protein; Belongs to the DEAD box helicase family. (534 aa)
	A0A1D2VSB5	Uncharacterized protein. (286 aa)
	A0A1D2VSL4	Uncharacterized protein. (171 aa)

Your Current Organism:

Ascoidea rubescens

NCBI taxonomy Id: 1344418
Other names: A. rubescens DSM 1968, Ascoidea rubescens DSM 1968

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1D2V8G4	A0A1D2V8H5	A0A1D2V8G4	A0A1D2V8H5	RNA-binding domain-containing protein.	Uncharacterized protein.	0.526
A0A1D2V8G4	A0A1D2V9J6	A0A1D2V8G4	A0A1D2V9J6	RNA-binding domain-containing protein.	P68 RNA helicase; Belongs to the DEAD box helicase family.	0.568
A0A1D2V8G4	A0A1D2VAF7	A0A1D2V8G4	A0A1D2VAF7	RNA-binding domain-containing protein.	Uncharacterized protein.	0.948
A0A1D2V8G4	A0A1D2VAQ8	A0A1D2V8G4	A0A1D2VAQ8	RNA-binding domain-containing protein.	Small nuclear ribonucleoprotein G.	0.933
A0A1D2V8G4	A0A1D2VAV0	A0A1D2V8G4	A0A1D2VAV0	RNA-binding domain-containing protein.	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.517
A0A1D2V8G4	A0A1D2VBE0	A0A1D2V8G4	A0A1D2VBE0	RNA-binding domain-containing protein.	WD40 repeat-like protein.	0.555
A0A1D2V8G4	A0A1D2VBL6	A0A1D2V8G4	A0A1D2VBL6	RNA-binding domain-containing protein.	Pre-mRNA splicing factor rse1.	0.958
A0A1D2V8G4	A0A1D2VBN0	A0A1D2V8G4	A0A1D2VBN0	RNA-binding domain-containing protein.	YGL120Cp-like protein.	0.764
A0A1D2V8G4	A0A1D2VBN9	A0A1D2V8G4	A0A1D2VBN9	RNA-binding domain-containing protein.	Sm-like ribonucleo protein.	0.769
A0A1D2V8G4	A0A1D2VBX0	A0A1D2V8G4	A0A1D2VBX0	RNA-binding domain-containing protein.	RRM domain-containing protein.	0.465
A0A1D2V8G4	A0A1D2VC20	A0A1D2V8G4	A0A1D2VC20	RNA-binding domain-containing protein.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.944
A0A1D2V8G4	A0A1D2VC26	A0A1D2V8G4	A0A1D2VC26	RNA-binding domain-containing protein.	SURP motif domain-containing protein.	0.854
A0A1D2V8G4	A0A1D2VC42	A0A1D2V8G4	A0A1D2VC42	RNA-binding domain-containing protein.	P-loop containing nucleoside triphosphate hydrolase protein.	0.515
A0A1D2V8G4	A0A1D2VCE0	A0A1D2V8G4	A0A1D2VCE0	RNA-binding domain-containing protein.	Nucleolar protein required for maturation of 18S rRNA; Belongs to the DEAD box helicase family.	0.593
A0A1D2V8G4	A0A1D2VCL8	A0A1D2V8G4	A0A1D2VCL8	RNA-binding domain-containing protein.	Uncharacterized protein.	0.518
A0A1D2V8G4	A0A1D2VCM6	A0A1D2V8G4	A0A1D2VCM6	RNA-binding domain-containing protein.	P-loop containing nucleoside triphosphate hydrolase protein; Belongs to the DEAD box helicase family.	0.567
A0A1D2V8G4	A0A1D2VCP4	A0A1D2V8G4	A0A1D2VCP4	RNA-binding domain-containing protein.	Uncharacterized protein.	0.569
A0A1D2V8G4	A0A1D2VCV0	A0A1D2V8G4	A0A1D2VCV0	RNA-binding domain-containing protein.	U1-type domain-containing protein.	0.946
A0A1D2V8G4	A0A1D2VCZ8	A0A1D2V8G4	A0A1D2VCZ8	RNA-binding domain-containing protein.	ARM repeat-containing protein.	0.960
A0A1D2V8G4	A0A1D2VDT0	A0A1D2V8G4	A0A1D2VDT0	RNA-binding domain-containing protein.	Uncharacterized protein.	0.829