(23 nodes) Autophagy - other network (Ascoidea rubescens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1D2VPE7	WD40 repeat-like protein. (443 aa)
	A0A1D2V8S3	Uncharacterized protein. (2066 aa)
	A0A1D2V9A8	Serine/threonine-protein phosphatase. (361 aa)
	A0A1D2V9J3	Autophagy_act_C domain-containing protein. (195 aa)
	A0A1D2V9U1	Cysteine protease; Cysteine protease required for the cytoplasm to vacuole transport (Cvt) and autophagy. (788 aa)
	A0A1D2VAS7	Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family. (514 aa)
	A0A1D2VB08	Autophagy-related protein 3. (355 aa)
	A0A1D2VCM7	Serine/threonine-protein kinase TOR; Belongs to the PI3/PI4-kinase family. (2478 aa)
	A0A1D2VFF1	WD40 repeat-like protein. (1366 aa)
	A0A1D2VIB6	Putative intracellular transport protein. (304 aa)
	A0A1D2VQF1	ARM repeat-containing protein. (1466 aa)
	A0A1D2VIU3	Autophagy protein 5; Involved in cytoplasm to vacuole transport (Cvt) and autophagic vesicle formation. (288 aa)
	A0A1D2VJA9	WD40 repeat-like protein. (803 aa)
	A0A1D2VJI9	Pkinase-domain-containing protein. (822 aa)
	A0A1D2VJQ3	Autophagy-related protein. (118 aa)
	A0A1D2VKF4	ATG11 domain-containing protein. (814 aa)
	A0A1D2VKU6	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for cytoplasm to vacuole transport (Cvt) and autophagy. Activates ATG12 for its conjugation with ATG5 and ATG8 for its conjugation with phosphatidylethanolamine. Both systems are needed for the ATG8 association to Cvt vesicles and autophagosomes membranes. Autophagy is essential for maintenance of amino acid levels and protein synthesis under nitrogen starvation. Required for selective autophagic degradation of the nucleus (nucleophagy) as well as for mitophagy wh [...] (651 aa)
	A0A1D2VL63	Kinase-like protein; Belongs to the PI3/PI4-kinase family. (255 aa)
	A0A1D2VL72	APG6-domain-containing protein. (599 aa)
	A0A1D2VL93	Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (657 aa)
	A0A1D2VNB6	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in cytoplasm to vacuole transport (Cvt), autophagy vesicles formation, mitophagy, and nucleophagy. (189 aa)
	A0A1D2VNT0	TAP42-like protein. (370 aa)
	A0A1D2VP47	Uncharacterized protein. (436 aa)

Your Current Organism:

Ascoidea rubescens

NCBI taxonomy Id: 1344418
Other names: A. rubescens DSM 1968, Ascoidea rubescens DSM 1968

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1D2V8S3	A0A1D2V9J3	Uncharacterized protein.	Autophagy_act_C domain-containing protein.	0.510
A0A1D2V8S3	A0A1D2V9U1	Uncharacterized protein.	Cysteine protease; Cysteine protease required for the cytoplasm to vacuole transport (Cvt) and autophagy.	0.533
A0A1D2V8S3	A0A1D2VAS7	Uncharacterized protein.	Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family.	0.931
A0A1D2V8S3	A0A1D2VB08	Uncharacterized protein.	Autophagy-related protein 3.	0.521
A0A1D2V8S3	A0A1D2VIU3	Uncharacterized protein.	Autophagy protein 5; Involved in cytoplasm to vacuole transport (Cvt) and autophagic vesicle formation.	0.547
A0A1D2V8S3	A0A1D2VJA9	Uncharacterized protein.	WD40 repeat-like protein.	0.948
A0A1D2V8S3	A0A1D2VJI9	Uncharacterized protein.	Pkinase-domain-containing protein.	0.992
A0A1D2V8S3	A0A1D2VJQ3	Uncharacterized protein.	Autophagy-related protein.	0.569
A0A1D2V8S3	A0A1D2VKF4	Uncharacterized protein.	ATG11 domain-containing protein.	0.520
A0A1D2V8S3	A0A1D2VKU6	Uncharacterized protein.	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for cytoplasm to vacuole transport (Cvt) and autophagy. Activates ATG12 for its conjugation with ATG5 and ATG8 for its conjugation with phosphatidylethanolamine. Both systems are needed for the ATG8 association to Cvt vesicles and autophagosomes membranes. Autophagy is essential for maintenance of amino acid levels and protein synthesis under nitrogen starvation. Required for selective autophagic degradation of the nucleus (nucleophagy) as well as for mitophagy wh [...]	0.521
A0A1D2V8S3	A0A1D2VL72	Uncharacterized protein.	APG6-domain-containing protein.	0.521
A0A1D2V8S3	A0A1D2VNB6	Uncharacterized protein.	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in cytoplasm to vacuole transport (Cvt), autophagy vesicles formation, mitophagy, and nucleophagy.	0.521
A0A1D2V8S3	A0A1D2VP47	Uncharacterized protein.	Uncharacterized protein.	0.521
A0A1D2V8S3	A0A1D2VPE7	Uncharacterized protein.	WD40 repeat-like protein.	0.948
A0A1D2V8S3	A0A1D2VQF1	Uncharacterized protein.	ARM repeat-containing protein.	0.536
A0A1D2V9A8	A0A1D2VCM7	Serine/threonine-protein phosphatase.	Serine/threonine-protein kinase TOR; Belongs to the PI3/PI4-kinase family.	0.827
A0A1D2V9A8	A0A1D2VFF1	Serine/threonine-protein phosphatase.	WD40 repeat-like protein.	0.730
A0A1D2V9A8	A0A1D2VIB6	Serine/threonine-protein phosphatase.	Putative intracellular transport protein.	0.768
A0A1D2V9A8	A0A1D2VJI9	Serine/threonine-protein phosphatase.	Pkinase-domain-containing protein.	0.776
A0A1D2V9A8	A0A1D2VKF4	Serine/threonine-protein phosphatase.	ATG11 domain-containing protein.	0.804