(23 nodes) Mixed, incl. Glycosyl transferase family 2, and 3-beta hydroxysteroid dehydrogenase/isomerase family network (Streptococcus iniae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	metK	Methionine adenosyltransferase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme. (395 aa)
	pdi	Deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (306 aa)
	APD31978.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (155 aa)
	APD31979.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (162 aa)
	pepT	Peptidase T; Cleaves the N-terminal amino acid of tripeptides. Belongs to the peptidase M20B family. (407 aa)
	APD31981.1	Acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (345 aa)
	APD31982.1	Nucleoside-diphosphate sugar epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (279 aa)
	APD31983.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (264 aa)
	APD31984.1	Cell wall biosynthesis glycosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (321 aa)
	APD31985.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (419 aa)
	APD31986.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (119 aa)
	APD31987.1	Glycosyl transferase family 2; Derived by automated computational analysis using gene prediction method: Protein Homology. (241 aa)
	APD31988.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (436 aa)
	APD31989.1	Rhamnosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (326 aa)
	APD31990.1	Glycosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (408 aa)
	APD31991.1	Glycosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (421 aa)
	APD31992.1	Phosphate/phosphonate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (388 aa)
	APD31993.1	LPS ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (268 aa)
	APD31994.1	alpha-L-Rha alpha-1,3-L-rhamnosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (310 aa)
	APD31995.1	Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (384 aa)
	APD32140.1	Epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (208 aa)
	APD32671.1	UDP-glucose 6-dehydrogenase; Catalyzes the formation of UDP-glucuronate from UDP-glucose; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family. (401 aa)
	APD32672.1	Hyaluronan synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (421 aa)

Your Current Organism:

Streptococcus iniae

NCBI taxonomy Id: 1346
Other names: ATCC 29178, CCUG 27303, CIP 102508, DSM 20576, LMG 14520, LMG:14520, S. iniae, Streptococcus shiloi, strain PW

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APD31978.1	APD31979.1	BMF34_05705	BMF34_05710	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.486
APD31978.1	pepT	BMF34_05705	BMF34_05715	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidase T; Cleaves the N-terminal amino acid of tripeptides. Belongs to the peptidase M20B family.	0.423
APD31979.1	APD31978.1	BMF34_05710	BMF34_05705	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.486
APD31979.1	APD31981.1	BMF34_05710	BMF34_05720	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.404
APD31979.1	APD31982.1	BMF34_05710	BMF34_05725	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nucleoside-diphosphate sugar epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.404
APD31979.1	APD31983.1	BMF34_05710	BMF34_05730	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.434
APD31979.1	pepT	BMF34_05710	BMF34_05715	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidase T; Cleaves the N-terminal amino acid of tripeptides. Belongs to the peptidase M20B family.	0.726
APD31981.1	APD31979.1	BMF34_05720	BMF34_05710	Acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.404
APD31981.1	APD31982.1	BMF34_05720	BMF34_05725	Acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nucleoside-diphosphate sugar epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.847
APD31981.1	APD31983.1	BMF34_05720	BMF34_05730	Acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.730
APD31981.1	APD31984.1	BMF34_05720	BMF34_05735	Acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cell wall biosynthesis glycosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.575
APD31981.1	APD31985.1	BMF34_05720	BMF34_05740	Acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.626
APD31981.1	APD31986.1	BMF34_05720	BMF34_05745	Acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.566
APD31981.1	APD31987.1	BMF34_05720	BMF34_05750	Acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyl transferase family 2; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.568
APD31981.1	APD31988.1	BMF34_05720	BMF34_05755	Acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.462
APD31981.1	APD31989.1	BMF34_05720	BMF34_05760	Acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Rhamnosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.667
APD31981.1	APD31990.1	BMF34_05720	BMF34_05765	Acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.417
APD31981.1	APD31992.1	BMF34_05720	BMF34_05775	Acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphate/phosphonate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.568
APD31981.1	APD31993.1	BMF34_05720	BMF34_05780	Acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	LPS ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.529
APD31981.1	APD31994.1	BMF34_05720	BMF34_05785	Acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	alpha-L-Rha alpha-1,3-L-rhamnosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.444