(25 nodes) ATP-binding cassette (ABC) transporter complex network (Streptococcus iniae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APD32872.1	Glycine/betaine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (575 aa)
	APD31091.1	Zinc ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (232 aa)
	APD31092.1	Zinc ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (271 aa)
	APD31159.1	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (244 aa)
	APD31325.1	Glutamine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (522 aa)
	bug4	Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (659 aa)
	APD31402.1	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily. (359 aa)
	APD31450.1	Glutamine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (229 aa)
	APD31583.1	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (723 aa)
	APD31590.1	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (418 aa)
	APD31599.1	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (417 aa)
	APD31703.1	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (219 aa)
	APD31727.1	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (213 aa)
	APD31857.1	Glycine/betaine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (509 aa)
	potA	Spermidine/putrescine ABC transporter ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family. (384 aa)
	APD31993.1	LPS ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (268 aa)
	sagI	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (372 aa)
	APD32115.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (549 aa)
	APD32163.1	Glutamine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (233 aa)
	APD32164.1	Glutamine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (215 aa)
	mtsC	Manganese ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (283 aa)
	mtsB	Manganese ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (242 aa)
	APD32383.1	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (267 aa)
	APD32482.1	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (479 aa)
	APD32590.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (551 aa)

Your Current Organism:

Streptococcus iniae

NCBI taxonomy Id: 1346
Other names: ATCC 29178, CCUG 27303, CIP 102508, DSM 20576, LMG 14520, LMG:14520, S. iniae, Streptococcus shiloi, strain PW

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APD31091.1	APD31092.1	BMF34_00880	BMF34_00885	Zinc ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Zinc ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
APD31091.1	mtsB	BMF34_00880	BMF34_07005	Zinc ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Manganese ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.621
APD31091.1	mtsC	BMF34_00880	BMF34_07000	Zinc ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Manganese ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.966
APD31092.1	APD31091.1	BMF34_00885	BMF34_00880	Zinc ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Zinc ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
APD31092.1	APD31450.1	BMF34_00885	BMF34_02910	Zinc ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.473
APD31092.1	APD31703.1	BMF34_00885	BMF34_04230	Zinc ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.424
APD31092.1	APD31727.1	BMF34_00885	BMF34_04375	Zinc ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.477
APD31092.1	APD32383.1	BMF34_00885	BMF34_07885	Zinc ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.419
APD31092.1	mtsB	BMF34_00885	BMF34_07005	Zinc ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Manganese ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.972
APD31092.1	mtsC	BMF34_00885	BMF34_07000	Zinc ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Manganese ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.739
APD31159.1	APD31993.1	BMF34_01230	BMF34_05780	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	LPS ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.426
APD31325.1	APD31450.1	BMF34_02170	BMF34_02910	Glutamine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.783
APD31325.1	APD31583.1	BMF34_02170	BMF34_03610	Glutamine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.858
APD31325.1	APD31703.1	BMF34_02170	BMF34_04230	Glutamine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.700
APD31325.1	APD31727.1	BMF34_02170	BMF34_04375	Glutamine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.573
APD31325.1	APD31857.1	BMF34_02170	BMF34_05075	Glutamine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycine/betaine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.564
APD31325.1	APD31993.1	BMF34_02170	BMF34_05780	Glutamine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	LPS ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.413
APD31325.1	APD32115.1	BMF34_02170	BMF34_06415	Glutamine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.436
APD31325.1	APD32163.1	BMF34_02170	BMF34_06670	Glutamine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.587
APD31325.1	APD32164.1	BMF34_02170	BMF34_06675	Glutamine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.609