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APD32255.1 | IS1182 family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (560 aa) | ||||
APD30980.1 | DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] (378 aa) | ||||
APD30993.1 | IS110 family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (380 aa) | ||||
APD30995.1 | Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (96 aa) | ||||
APD32818.1 | Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (71 aa) | ||||
APD30998.1 | IS256 family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (391 aa) | ||||
APD30999.1 | Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (96 aa) | ||||
ruvB | Holliday junction DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. (325 aa) | ||||
APD31061.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (86 aa) | ||||
APD31070.1 | IS256 family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (391 aa) | ||||
APD31074.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (86 aa) | ||||
APD31142.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (86 aa) | ||||
APD31192.1 | DDE transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (453 aa) | ||||
APD31196.1 | Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (96 aa) | ||||
BMF34_01455 | Hypothetical protein; Incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (391 aa) | ||||
polC | PolC-type DNA polymerase III; Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity. (1464 aa) | ||||
APD31268.1 | Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (96 aa) | ||||
APD31334.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (86 aa) | ||||
rrf | tRNA-Glu; Derived by automated computational analysis using gene prediction method: cmsearch. (104 aa) | ||||
APD31351.1 | IS1182 family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (564 aa) | ||||
APD31388.1 | DNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (283 aa) | ||||
APD31395.1 | DNA (cytosine-5-)-methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (406 aa) | ||||
APD31397.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (86 aa) | ||||
xseA | Exodeoxyribonuclease VII large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family. (442 aa) | ||||
xseB | Exodeoxyribonuclease VII small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family. (71 aa) | ||||
APD31478.1 | IS1182 family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (561 aa) | ||||
APD31488.1 | DNA polymerase III subunit delta; Derived by automated computational analysis using gene prediction method: Protein Homology. (343 aa) | ||||
APD31497.1 | Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (96 aa) | ||||
BMF34_03220 | Hypothetical protein; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology. (39 aa) | ||||
dnaX | DNA polymerase III subunit gamma/tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. (557 aa) | ||||
APD31548.1 | Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (96 aa) | ||||
BMF34_03435 | Transcriptional regulator; Incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (86 aa) | ||||
APD31551.1 | IS256 family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (391 aa) | ||||
APD31552.1 | IS256 family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (391 aa) | ||||
uvrB | Excinuclease ABC subunit B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...] (663 aa) | ||||
nth | Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. (218 aa) | ||||
APD31617.1 | IS256 family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (391 aa) | ||||
cas1 | Subtype II CRISPR-associated endonuclease Cas1; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette. (288 aa) | ||||
uvrC | Excinuclease ABC subunit C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. (591 aa) | ||||
ung | uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine. (217 aa) | ||||
parE | DNA topoisomerase IV subunit B; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase family. ParE type 2 subfamily. (649 aa) | ||||
parC | DNA topoisomerase IV subunit A; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase GyrA/ParC subunit family. ParC type 2 subfamily. (807 aa) | ||||
APD31717.1 | DNA polymerase III subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology. (1034 aa) | ||||
pcrA | ATP-dependent DNA helicase PcrA; Derived by automated computational analysis using gene prediction method: Protein Homology. (766 aa) | ||||
APD31745.1 | Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (171 aa) | ||||
APD31787.1 | DDE transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (489 aa) | ||||
topA | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] (711 aa) | ||||
APD31804.1 | IS256 family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (391 aa) | ||||
xerS | Tyrosine recombinase XerS; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. Essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. (356 aa) | ||||
APD31812.1 | IS256 family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (391 aa) | ||||
APD31814.1 | IS256 family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (391 aa) | ||||
APD31835.1 | IS256 family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (391 aa) | ||||
gyrA | DNA gyrase subunit A; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. (825 aa) | ||||
BMF34_05030 | IS30 family transposase; Incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (96 aa) | ||||
APD31851.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (110 aa) | ||||
APD31902.1 | IS256 family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (391 aa) | ||||
APD31904.1 | Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (96 aa) | ||||
APD31905.1 | IS200/IS605 family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (146 aa) | ||||
APD31961.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (86 aa) | ||||
addA | Helicase-exonuclease AddAB subunit AddA; ATP-dependent DNA helicase. (1215 aa) | ||||
rexB | ATP-dependent nuclease subunit B; The heterodimer acts as both an ATP-dependent DNA helicase and an ATP-dependent, dual-direction single-stranded exonuclease. Recognizes the chi site generating a DNA molecule suitable for the initiation of homologous recombination. This subunit has 5' -> 3' nuclease activity; Belongs to the helicase family. AddB/RexB type 2 subfamily. (1078 aa) | ||||
ligA | DNA ligase (NAD(+)) LigA; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA; Belongs to the NAD-dependent DNA ligase family. LigA subfamily. (652 aa) | ||||
gyrB | DNA gyrase subunit B; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. (650 aa) | ||||
APD32060.1 | Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (96 aa) | ||||
dinG | Bifunctional DnaQ family exonuclease/ATP-dependent helicase; 3'-5' exonuclease. (820 aa) | ||||
APD32154.1 | IS256 family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (391 aa) | ||||
APD32172.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (86 aa) | ||||
APD32174.1 | IS256 family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (391 aa) | ||||
APD32178.1 | IS200/IS605 family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (154 aa) | ||||
APD32190.1 | IS256 family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (391 aa) | ||||
mutM | DNA-formamidopyrimidine glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. (279 aa) | ||||
BMF34_06880 | ABC transporter ATP-binding protein; Incomplete; partial on complete genome; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology. (391 aa) | ||||
APD32211.1 | uracil-DNA glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (190 aa) | ||||
xth | Exodeoxyribonuclease III; Derived by automated computational analysis using gene prediction method: Protein Homology. (275 aa) | ||||
APD32263.1 | DNA polymerase III subunit delta; Catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; Derived by automated computational analysis using gene prediction method: Protein Homology. (291 aa) | ||||
APD32276.1 | DDE transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (480 aa) | ||||
APD32297.1 | Site-specific tyrosine recombinase XerD; Putative tyrosine recombinase. Not involved in the cutting and rejoining of the recombining DNA molecules on dif(SL) site. Belongs to the 'phage' integrase family. XerD-like subfamily. (247 aa) | ||||
APD32315.1 | Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (96 aa) | ||||
APD32317.1 | RNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1029 aa) | ||||
APD32355.1 | IS200/IS605 family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (129 aa) | ||||
priA | Primosomal protein N; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. (795 aa) | ||||
recU | Holliday junction resolvase RecU; Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation; Belongs to the RecU family. (200 aa) | ||||
APD32419.1 | Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (96 aa) | ||||
recG | ATP-dependent DNA helicase RecG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily. (671 aa) | ||||
uvrA | Excinuclease ABC subunit A; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. (940 aa) | ||||
mutY | A/G-specific adenine glycosylase; Adenine glycosylase active on G-A mispairs. (385 aa) | ||||
mutS2 | Endonuclease MutS2; Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity; Belongs to the DNA mismatch repair MutS family. MutS2 subfamily. (778 aa) | ||||
recD2 | Exodeoxyribonuclease V subunit alpha; DNA-dependent ATPase and ATP-dependent 5'-3' DNA helicase. Has no activity on blunt DNA or DNA with 3'-overhangs, requires at least 10 bases of 5'-ssDNA for helicase activity; Belongs to the RecD family. RecD-like subfamily. (793 aa) | ||||
dinB | DNA polymerase IV; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII. (364 aa) | ||||
APD32528.1 | IS1182 family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (561 aa) | ||||
APD32560.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (86 aa) | ||||
APD32563.1 | IS256 family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (391 aa) | ||||
APD32571.1 | Replication protein RepA; Derived by automated computational analysis using gene prediction method: Protein Homology. (395 aa) | ||||
APD32613.1 | Hydrolase TatD; Derived by automated computational analysis using gene prediction method: Protein Homology. (257 aa) | ||||
APD32615.1 | Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (171 aa) | ||||
APD32633.1 | Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (96 aa) | ||||
APD32649.1 | IS200/IS605 family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (154 aa) | ||||
radA | DNA repair protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function. (454 aa) | ||||
polA | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. (880 aa) | ||||
APD32737.1 | Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (171 aa) | ||||
recA | Recombinase RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. (377 aa) | ||||
APD32760.1 | 3-methyladenine DNA glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (183 aa) | ||||
ruvA | Holliday junction DNA helicase RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. (197 aa) | ||||
mutL | DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. (652 aa) | ||||
mutS | DNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity. (846 aa) | ||||
APD32774.1 | Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (171 aa) | ||||
APD32790.1 | Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. (452 aa) | ||||
APD32815.1 | IS256 family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (391 aa) |