(34 nodes) Binding-protein-dependent transport system inner membrane component network (Streptococcus iniae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APD32589.1	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (304 aa)
	APD31368.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (276 aa)
	APD31403.1	Iron ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (554 aa)
	APD31450.1	Glutamine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (229 aa)
	APD31583.1	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (723 aa)
	APD31593.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (434 aa)
	APD31594.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (286 aa)
	APD31597.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (278 aa)
	APD31598.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (449 aa)
	APD31703.1	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (219 aa)
	APD31727.1	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (213 aa)
	pstC	Phosphate ABC transporter permease subunit PstC; Part of the binding-protein-dependent transport system for phosphate; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily. (311 aa)
	pstA	Phosphate ABC transporter, permease protein PstA; Derived by automated computational analysis using gene prediction method: Protein Homology. (295 aa)
	APD31857.1	Glycine/betaine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (509 aa)
	APD31889.1	Spermidine/putrescine ABC transporter permease PotC; Derived by automated computational analysis using gene prediction method: Protein Homology. (258 aa)
	APD31890.1	Spermidine/putrescine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (264 aa)
	pstA-2	Phosphate ABC transporter, permease protein PstA; Derived by automated computational analysis using gene prediction method: Protein Homology. (271 aa)
	pstC-2	Phosphate ABC transporter permease subunit PstC; Part of the binding-protein-dependent transport system for phosphate; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily. (287 aa)
	APD32163.1	Glutamine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (233 aa)
	APD32164.1	Glutamine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (215 aa)
	APD32331.1	Methionine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (229 aa)
	APD32383.1	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (267 aa)
	APD32588.1	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (343 aa)
	APD31367.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (296 aa)
	APD32622.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (278 aa)
	APD32623.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (290 aa)
	APD32627.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (276 aa)
	APD32628.1	Acetylneuraminate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (295 aa)
	APD32872.1	Glycine/betaine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (575 aa)
	APD31254.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (309 aa)
	APD31255.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (305 aa)
	APD31325.1	Glutamine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (522 aa)
	APD31338.1	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (499 aa)
	APD31339.1	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (308 aa)

Your Current Organism:

Streptococcus iniae

NCBI taxonomy Id: 1346
Other names: ATCC 29178, CCUG 27303, CIP 102508, DSM 20576, LMG 14520, LMG:14520, S. iniae, Streptococcus shiloi, strain PW

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APD31254.1	APD31255.1	BMF34_01760	BMF34_01765	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
APD31254.1	APD31367.1	BMF34_01760	BMF34_02465	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.476
APD31254.1	APD31368.1	BMF34_01760	BMF34_02470	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.916
APD31254.1	APD31593.1	BMF34_01760	BMF34_03660	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.412
APD31254.1	APD32622.1	BMF34_01760	BMF34_09130	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.887
APD31254.1	APD32623.1	BMF34_01760	BMF34_09135	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.449
APD31254.1	APD32627.1	BMF34_01760	BMF34_09155	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.900
APD31254.1	APD32628.1	BMF34_01760	BMF34_09160	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Acetylneuraminate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.454
APD31255.1	APD31254.1	BMF34_01765	BMF34_01760	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
APD31255.1	APD31367.1	BMF34_01765	BMF34_02465	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.904
APD31255.1	APD31593.1	BMF34_01765	BMF34_03660	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.799
APD31255.1	APD31594.1	BMF34_01765	BMF34_03665	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.404
APD31255.1	APD31598.1	BMF34_01765	BMF34_03685	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.802
APD31255.1	APD31890.1	BMF34_01765	BMF34_05240	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Spermidine/putrescine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.417
APD31255.1	APD32623.1	BMF34_01765	BMF34_09135	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.900
APD31255.1	APD32628.1	BMF34_01765	BMF34_09160	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Acetylneuraminate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.899
APD31325.1	APD31450.1	BMF34_02170	BMF34_02910	Glutamine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.783
APD31325.1	APD31583.1	BMF34_02170	BMF34_03610	Glutamine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.858
APD31325.1	APD31703.1	BMF34_02170	BMF34_04230	Glutamine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.700
APD31325.1	APD31727.1	BMF34_02170	BMF34_04375	Glutamine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.573