(11 nodes) Mixed, incl. Nitrogen utilization, and L-methylmalonyl-CoA metabolic process network (Sphingobium ummariense)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	EQB33634.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (210 aa)
	EQB33635.1	Esterase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (226 aa)
	EQB33636.1	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (164 aa)
	EQB33637.1	Hydroquinone 1,2-dioxygenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (321 aa)
	EQB33638.1	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the LysR transcriptional regulatory family. (293 aa)
	EQB29909.1	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (293 aa)
	EQB29910.1	Hydroquinone 1,2-dioxygenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (321 aa)
	EQB29911.1	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (164 aa)
	EQB29912.1	Esterase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (226 aa)
	EQB29913.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (210 aa)
	EQB29914.1	2,5-dichlorohydroquinone reductive dechlorinase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (283 aa)

Your Current Organism:

Sphingobium ummariense

NCBI taxonomy Id: 1346791
Other names: S. ummariense RL-3, Sphingobium sp. RL-3, Sphingobium ummariense RL-3

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EQB29909.1	EQB29910.1	M529_22550	M529_22555	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hydroquinone 1,2-dioxygenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.517
EQB29910.1	EQB29909.1	M529_22555	M529_22550	Hydroquinone 1,2-dioxygenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.517
EQB29910.1	EQB29911.1	M529_22555	M529_22560	Hydroquinone 1,2-dioxygenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.418
EQB29910.1	EQB29912.1	M529_22555	M529_22565	Hydroquinone 1,2-dioxygenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Esterase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.831
EQB29910.1	EQB33635.1	M529_22555	M529_03190	Hydroquinone 1,2-dioxygenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Esterase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.751
EQB29911.1	EQB29910.1	M529_22560	M529_22555	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hydroquinone 1,2-dioxygenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.418
EQB29911.1	EQB29912.1	M529_22560	M529_22565	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Esterase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.671
EQB29911.1	EQB29913.1	M529_22560	M529_22570	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.671
EQB29912.1	EQB29910.1	M529_22565	M529_22555	Esterase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hydroquinone 1,2-dioxygenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.831
EQB29912.1	EQB29911.1	M529_22565	M529_22560	Esterase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.671
EQB29912.1	EQB29913.1	M529_22565	M529_22570	Esterase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.773
EQB29912.1	EQB29914.1	M529_22565	M529_22575	Esterase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	2,5-dichlorohydroquinone reductive dechlorinase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.422
EQB29912.1	EQB33637.1	M529_22565	M529_03200	Esterase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hydroquinone 1,2-dioxygenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.751
EQB29913.1	EQB29911.1	M529_22570	M529_22560	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.671
EQB29913.1	EQB29912.1	M529_22570	M529_22565	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Esterase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.773
EQB29913.1	EQB29914.1	M529_22570	M529_22575	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	2,5-dichlorohydroquinone reductive dechlorinase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.422
EQB29914.1	EQB29912.1	M529_22575	M529_22565	2,5-dichlorohydroquinone reductive dechlorinase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Esterase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.422
EQB29914.1	EQB29913.1	M529_22575	M529_22570	2,5-dichlorohydroquinone reductive dechlorinase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.422
EQB33634.1	EQB33635.1	M529_03185	M529_03190	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Esterase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.773
EQB33634.1	EQB33636.1	M529_03185	M529_03195	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.678