(51 nodes) Mixed, incl. Phosphorelay signal transduction system, and FtsX-like permease family network (Lactococcus raffinolactis NBRC100932)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CMV25_05985	Unannotated protein. (153 aa)
	coaD	Unannotated protein; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family. (160 aa)
	CMV25_05995	Unannotated protein. (352 aa)
	CMV25_06000	Unannotated protein. (410 aa)
	CMV25_06005	Unannotated protein. (237 aa)
	CMV25_06380	Unannotated protein. (329 aa)
	CMV25_06820	Unannotated protein. (230 aa)
	CMV25_06825	Unannotated protein. (496 aa)
	GCA_001591765_00214	Unannotated protein. (219 aa)
	GCA_001591765_00215	Unannotated protein. (96 aa)
	GCA_001591765_00216	Unannotated protein. (303 aa)
	GCA_001591765_00217	Unannotated protein. (135 aa)
	GCA_001591765_00218	Unannotated protein. (851 aa)
	CMV25_09120	Unannotated protein. (223 aa)
	CMV25_09125	Unannotated protein. (451 aa)
	CMV25_09135	Unannotated protein. (355 aa)
	CMV25_09140	Unannotated protein. (222 aa)
	CMV25_03965	Unannotated protein. (188 aa)
	CMV25_09965	Unannotated protein. (512 aa)
	CMV25_09970	Unannotated protein. (230 aa)
	CMV25_10020	Unannotated protein. (118 aa)
	CMV25_10025	Unannotated protein. (250 aa)
	CMV25_10030	Unannotated protein. (658 aa)
	CMV25_10035	Unannotated protein. (218 aa)
	CMV25_10040	Unannotated protein. (318 aa)
	CMV25_00800	Unannotated protein. (388 aa)
	CMV25_00805	Unannotated protein. (379 aa)
	CMV25_00810	Unannotated protein. (309 aa)
	CMV25_00815	Unannotated protein. (394 aa)
	CMV25_00820	Unannotated protein. (213 aa)
	CMV25_07325	Unannotated protein. (226 aa)
	CMV25_07330	Unannotated protein. (489 aa)
	CMV25_07215	Unannotated protein. (207 aa)
	CMV25_07210	Unannotated protein. (226 aa)
	CMV25_07205	Unannotated protein. (108 aa)
	GCA_001591765_01306	Unannotated protein. (333 aa)
	CMV25_00510	Unannotated protein. (504 aa)
	CMV25_00515	Unannotated protein. (230 aa)
	CMV25_01990	Unannotated protein. (664 aa)
	CMV25_07530	Unannotated protein. (469 aa)
	CMV25_07525	Unannotated protein. (223 aa)
	CMV25_07520	Unannotated protein. (528 aa)
	CMV25_07515	Unannotated protein. (396 aa)
	CMV25_02635	Unannotated protein. (480 aa)
	CMV25_02630	Unannotated protein. (235 aa)
	CMV25_10975	Unannotated protein. (222 aa)
	CMV25_10980	Unannotated protein. (464 aa)
	GCA_001591765_01931	Unannotated protein. (80 aa)
	CMV25_08625	Unannotated protein. (128 aa)
	CMV25_08620	Unannotated protein. (652 aa)
	CMV25_08610	Unannotated protein. (95 aa)

Your Current Organism:

Lactococcus raffinolactis NBRC100932

NCBI taxonomy Id: 1348633
Other names: L. raffinolactis NBRC 100932, Lactococcus raffinolactis NBRC 100932

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CMV25_00510	CMV25_00515	GCA_001591765_01307	GCA_001591765_01308	Unannotated protein.	Unannotated protein.	0.973
CMV25_00510	CMV25_00800	GCA_001591765_01307	GCA_001591765_00954	Unannotated protein.	Unannotated protein.	0.437
CMV25_00510	CMV25_00805	GCA_001591765_01307	GCA_001591765_00955	Unannotated protein.	Unannotated protein.	0.439
CMV25_00510	CMV25_01990	GCA_001591765_01307	GCA_001591765_01566	Unannotated protein.	Unannotated protein.	0.880
CMV25_00510	CMV25_07325	GCA_001591765_01307	GCA_001591765_01104	Unannotated protein.	Unannotated protein.	0.572
CMV25_00510	CMV25_07330	GCA_001591765_01307	GCA_001591765_01105	Unannotated protein.	Unannotated protein.	0.456
CMV25_00510	CMV25_07520	GCA_001591765_01307	GCA_001591765_01577	Unannotated protein.	Unannotated protein.	0.456
CMV25_00510	CMV25_07525	GCA_001591765_01307	GCA_001591765_01576	Unannotated protein.	Unannotated protein.	0.572
CMV25_00510	CMV25_08625	GCA_001591765_01307	GCA_001591765_01932	Unannotated protein.	Unannotated protein.	0.572
CMV25_00510	CMV25_09135	GCA_001591765_01307	GCA_001591765_00294	Unannotated protein.	Unannotated protein.	0.456
CMV25_00510	CMV25_09140	GCA_001591765_01307	GCA_001591765_00295	Unannotated protein.	Unannotated protein.	0.572
CMV25_00510	CMV25_10025	GCA_001591765_01307	GCA_001591765_00690	Unannotated protein.	Unannotated protein.	0.572
CMV25_00510	CMV25_10030	GCA_001591765_01307	GCA_001591765_00691	Unannotated protein.	Unannotated protein.	0.456
CMV25_00510	GCA_001591765_00218	GCA_001591765_01307	GCA_001591765_00218	Unannotated protein.	Unannotated protein.	0.534
CMV25_00510	GCA_001591765_01306	GCA_001591765_01307	GCA_001591765_01306	Unannotated protein.	Unannotated protein.	0.999
CMV25_00510	GCA_001591765_01931	GCA_001591765_01307	GCA_001591765_01931	Unannotated protein.	Unannotated protein.	0.572
CMV25_00515	CMV25_00510	GCA_001591765_01308	GCA_001591765_01307	Unannotated protein.	Unannotated protein.	0.973
CMV25_00515	CMV25_01990	GCA_001591765_01308	GCA_001591765_01566	Unannotated protein.	Unannotated protein.	0.770
CMV25_00515	CMV25_07215	GCA_001591765_01308	GCA_001591765_01115	Unannotated protein.	Unannotated protein.	0.403
CMV25_00515	CMV25_07330	GCA_001591765_01308	GCA_001591765_01105	Unannotated protein.	Unannotated protein.	0.776