(20 nodes) Phosphorelay signal transduction system, and Protein of unknown function (DUF1093) network (Lactococcus raffinolactis NBRC100932)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CMV25_06380	Unannotated protein. (329 aa)
	CMV25_06820	Unannotated protein. (230 aa)
	CMV25_06825	Unannotated protein. (496 aa)
	GCA_001591765_00214	Unannotated protein. (219 aa)
	GCA_001591765_00215	Unannotated protein. (96 aa)
	GCA_001591765_00216	Unannotated protein. (303 aa)
	CMV25_09120	Unannotated protein. (223 aa)
	CMV25_09125	Unannotated protein. (451 aa)
	CMV25_03965	Unannotated protein. (188 aa)
	CMV25_09965	Unannotated protein. (512 aa)
	CMV25_09970	Unannotated protein. (230 aa)
	CMV25_10020	Unannotated protein. (118 aa)
	CMV25_10025	Unannotated protein. (250 aa)
	CMV25_10030	Unannotated protein. (658 aa)
	CMV25_10035	Unannotated protein. (218 aa)
	CMV25_10040	Unannotated protein. (318 aa)
	CMV25_02635	Unannotated protein. (480 aa)
	CMV25_02630	Unannotated protein. (235 aa)
	CMV25_10975	Unannotated protein. (222 aa)
	CMV25_10980	Unannotated protein. (464 aa)

Your Current Organism:

Lactococcus raffinolactis NBRC100932

NCBI taxonomy Id: 1348633
Other names: L. raffinolactis NBRC 100932, Lactococcus raffinolactis NBRC 100932

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CMV25_02630	CMV25_02635	GCA_001591765_01737	GCA_001591765_01736	Unannotated protein.	Unannotated protein.	0.999
CMV25_02630	CMV25_06825	GCA_001591765_01737	GCA_001591765_00186	Unannotated protein.	Unannotated protein.	0.953
CMV25_02630	CMV25_09125	GCA_001591765_01737	GCA_001591765_00292	Unannotated protein.	Unannotated protein.	0.940
CMV25_02630	CMV25_09965	GCA_001591765_01737	GCA_001591765_00681	Unannotated protein.	Unannotated protein.	0.944
CMV25_02630	CMV25_09970	GCA_001591765_01737	GCA_001591765_00682	Unannotated protein.	Unannotated protein.	0.456
CMV25_02630	CMV25_10040	GCA_001591765_01737	GCA_001591765_00693	Unannotated protein.	Unannotated protein.	0.894
CMV25_02630	CMV25_10980	GCA_001591765_01737	GCA_001591765_01818	Unannotated protein.	Unannotated protein.	0.946
CMV25_02630	GCA_001591765_00214	GCA_001591765_01737	GCA_001591765_00214	Unannotated protein.	Unannotated protein.	0.431
CMV25_02630	GCA_001591765_00215	GCA_001591765_01737	GCA_001591765_00215	Unannotated protein.	Unannotated protein.	0.766
CMV25_02630	GCA_001591765_00216	GCA_001591765_01737	GCA_001591765_00216	Unannotated protein.	Unannotated protein.	0.934
CMV25_02635	CMV25_02630	GCA_001591765_01736	GCA_001591765_01737	Unannotated protein.	Unannotated protein.	0.999
CMV25_02635	CMV25_06380	GCA_001591765_01736	GCA_001591765_00092	Unannotated protein.	Unannotated protein.	0.453
CMV25_02635	CMV25_06820	GCA_001591765_01736	GCA_001591765_00185	Unannotated protein.	Unannotated protein.	0.932
CMV25_02635	CMV25_06825	GCA_001591765_01736	GCA_001591765_00186	Unannotated protein.	Unannotated protein.	0.574
CMV25_02635	CMV25_09120	GCA_001591765_01736	GCA_001591765_00291	Unannotated protein.	Unannotated protein.	0.897
CMV25_02635	CMV25_09125	GCA_001591765_01736	GCA_001591765_00292	Unannotated protein.	Unannotated protein.	0.562
CMV25_02635	CMV25_09965	GCA_001591765_01736	GCA_001591765_00681	Unannotated protein.	Unannotated protein.	0.573
CMV25_02635	CMV25_09970	GCA_001591765_01736	GCA_001591765_00682	Unannotated protein.	Unannotated protein.	0.939
CMV25_02635	CMV25_10035	GCA_001591765_01736	GCA_001591765_00692	Unannotated protein.	Unannotated protein.	0.934
CMV25_02635	CMV25_10040	GCA_001591765_01736	GCA_001591765_00693	Unannotated protein.	Unannotated protein.	0.440