(18 nodes) Fructose and mannose metabolism, and PTS system sorbose subfamily IIB component network (Lactococcus raffinolactis NBRC100932)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CMV25_06560	Unannotated protein. (158 aa)
	CMV25_06565	Unannotated protein. (266 aa)
	CMV25_06570	Unannotated protein. (272 aa)
	CMV25_06575	Unannotated protein. (142 aa)
	CMV25_09010	Unannotated protein. (129 aa)
	CMV25_09015	Unannotated protein. (303 aa)
	CMV25_09020	Unannotated protein. (269 aa)
	CMV25_09025	Unannotated protein. (329 aa)
	CMV25_04515	Unannotated protein. (274 aa)
	CMV25_04520	Unannotated protein. (264 aa)
	CMV25_04525	Unannotated protein. (163 aa)
	CMV25_04530	Unannotated protein. (147 aa)
	CMV25_01765	Unannotated protein. (146 aa)
	yajC-2	Unannotated protein. (91 aa)
	CMV25_01755	Unannotated protein. (160 aa)
	CMV25_01750	Unannotated protein. (268 aa)
	CMV25_01745	Unannotated protein. (179 aa)
	GCA_001591765_01979	Unannotated protein. (76 aa)

Your Current Organism:

Lactococcus raffinolactis NBRC100932

NCBI taxonomy Id: 1348633
Other names: L. raffinolactis NBRC 100932, Lactococcus raffinolactis NBRC 100932

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CMV25_01745	CMV25_01750	GCA_001591765_01772	GCA_001591765_01771	Unannotated protein.	Unannotated protein.	0.997
CMV25_01745	CMV25_01755	GCA_001591765_01772	GCA_001591765_01770	Unannotated protein.	Unannotated protein.	0.989
CMV25_01745	CMV25_01765	GCA_001591765_01772	GCA_001591765_01768	Unannotated protein.	Unannotated protein.	0.987
CMV25_01745	CMV25_04520	GCA_001591765_01772	GCA_001591765_01404	Unannotated protein.	Unannotated protein.	0.966
CMV25_01745	CMV25_04525	GCA_001591765_01772	GCA_001591765_01405	Unannotated protein.	Unannotated protein.	0.943
CMV25_01745	CMV25_04530	GCA_001591765_01772	GCA_001591765_01406	Unannotated protein.	Unannotated protein.	0.931
CMV25_01745	CMV25_06560	GCA_001591765_01772	GCA_001591765_00126	Unannotated protein.	Unannotated protein.	0.941
CMV25_01745	CMV25_06565	GCA_001591765_01772	GCA_001591765_00127	Unannotated protein.	Unannotated protein.	0.965
CMV25_01745	CMV25_06575	GCA_001591765_01772	GCA_001591765_00129	Unannotated protein.	Unannotated protein.	0.812
CMV25_01745	CMV25_09020	GCA_001591765_01772	GCA_001591765_00270	Unannotated protein.	Unannotated protein.	0.948
CMV25_01745	CMV25_09025	GCA_001591765_01772	GCA_001591765_00271	Unannotated protein.	Unannotated protein.	0.988
CMV25_01745	GCA_001591765_01979	GCA_001591765_01772	GCA_001591765_01979	Unannotated protein.	Unannotated protein.	0.791
CMV25_01745	yajC-2	GCA_001591765_01772	GCA_001591765_01769	Unannotated protein.	Unannotated protein.	0.799
CMV25_01750	CMV25_01745	GCA_001591765_01771	GCA_001591765_01772	Unannotated protein.	Unannotated protein.	0.997
CMV25_01750	CMV25_01755	GCA_001591765_01771	GCA_001591765_01770	Unannotated protein.	Unannotated protein.	0.990
CMV25_01750	CMV25_01765	GCA_001591765_01771	GCA_001591765_01768	Unannotated protein.	Unannotated protein.	0.998
CMV25_01750	CMV25_04515	GCA_001591765_01771	GCA_001591765_01403	Unannotated protein.	Unannotated protein.	0.959
CMV25_01750	CMV25_04525	GCA_001591765_01771	GCA_001591765_01405	Unannotated protein.	Unannotated protein.	0.934
CMV25_01750	CMV25_04530	GCA_001591765_01771	GCA_001591765_01406	Unannotated protein.	Unannotated protein.	0.904
CMV25_01750	CMV25_06560	GCA_001591765_01771	GCA_001591765_00126	Unannotated protein.	Unannotated protein.	0.927