STRINGSTRING
GCA_001591765_01572 GCA_001591765_01572 GCA_001591765_00032 GCA_001591765_00032 GCA_001591765_00039 GCA_001591765_00039 CMV25_06230 CMV25_06230 CMV25_06345 CMV25_06345 tyrS tyrS CMV25_06535 CMV25_06535 ruvX ruvX mgtA mgtA ybeY ybeY CMV25_08755 CMV25_08755 CMV25_08930 CMV25_08930 tadA tadA CMV25_08955 CMV25_08955 CMV25_09205 CMV25_09205 CMV25_09410 CMV25_09410 nth nth CMV25_09465 CMV25_09465 CMV25_09470 CMV25_09470 CMV25_09475 CMV25_09475 fabF fabF GCA_001591765_00403 GCA_001591765_00403 GCA_001591765_00404 GCA_001591765_00404 rplT rplT CMV25_01235 CMV25_01235 CMV25_02175 CMV25_02175 add add GCA_001591765_00534 GCA_001591765_00534 sufB sufB sufD sufD sufC sufC leuA leuA mgtE mgtE CMV25_03640 CMV25_03640 GCA_001591765_00602 GCA_001591765_00602 nadD nadD folK folK pheA pheA CMV25_10055 CMV25_10055 CMV25_10190 CMV25_10190 CMV25_10230 CMV25_10230 CMV25_10245 CMV25_10245 CMV25_10320 CMV25_10320 CMV25_04485 CMV25_04485 ispE ispE rplV rplV rplP rplP adk adk rpsM rpsM GCA_001591765_00830 GCA_001591765_00830 CMV25_10865 CMV25_10865 argB argB argC argC nadC nadC purF purF CMV25_07845 CMV25_07845 ychF ychF CMV25_03280 CMV25_03280 CMV25_03265 CMV25_03265 CMV25_04695 CMV25_04695 nadD-2 nadD-2 CMV25_07955 CMV25_07955 CMV25_07470 CMV25_07470 CMV25_08325 CMV25_08325 CMV25_10620 CMV25_10620 CMV25_02655 CMV25_02655 CMV25_02640 CMV25_02640 fhs fhs GCA_001591765_01867 GCA_001591765_01867 CMV25_04875 CMV25_04875 GCA_001591765_01886 GCA_001591765_01886 CMV25_08100 CMV25_08100 CMV25_01035 CMV25_01035 CMV25_07545 CMV25_07545 CMV25_01960 CMV25_01960 CMV25_01685 CMV25_01685 arsA arsA CMV25_00380 CMV25_00380 CMV25_09495 CMV25_09495 CMV25_08015 CMV25_08015 CMV25_08025 CMV25_08025 CMV25_08060 CMV25_08060 CMV25_00255 CMV25_00255 purD purD trxA trxA GCA_001591765_01330 GCA_001591765_01330 CMV25_09700 CMV25_09700 GCA_001591765_01338 GCA_001591765_01338 rnz rnz CMV25_04545 CMV25_04545 CMV25_04595 CMV25_04595 CMV25_08190 CMV25_08190 dinG dinG serC serC truA truA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
GCA_001591765_01572Unannotated protein. (386 aa)
GCA_001591765_00032Unannotated protein. (316 aa)
GCA_001591765_00039Unannotated protein. (334 aa)
CMV25_06230Unannotated protein. (105 aa)
CMV25_06345Unannotated protein. (380 aa)
tyrSUnannotated protein; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 1 subfamily. (417 aa)
CMV25_06535Unannotated protein. (147 aa)
ruvXUnannotated protein; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. (140 aa)
mgtAUnannotated protein. (837 aa)
ybeYUnannotated protein; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. (163 aa)
CMV25_08755Unannotated protein. (373 aa)
CMV25_08930Unannotated protein. (252 aa)
tadAUnannotated protein; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family. (144 aa)
CMV25_08955Unannotated protein; Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated. (167 aa)
CMV25_09205Unannotated protein. (381 aa)
CMV25_09410Unannotated protein. (650 aa)
nthUnannotated protein; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. (216 aa)
CMV25_09465Unannotated protein. (439 aa)
CMV25_09470Unannotated protein. (317 aa)
CMV25_09475Unannotated protein. (333 aa)
fabFUnannotated protein; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. (415 aa)
GCA_001591765_00403Unannotated protein. (118 aa)
GCA_001591765_00404Unannotated protein. (217 aa)
rplTUnannotated protein; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. (119 aa)
CMV25_01235Unannotated protein; Belongs to the FPP/GGPP synthase family. (290 aa)
CMV25_02175Unannotated protein. (661 aa)
addUnannotated protein. (333 aa)
GCA_001591765_00534Unannotated protein. (130 aa)
sufBUnannotated protein. (472 aa)
sufDUnannotated protein. (420 aa)
sufCUnannotated protein. (256 aa)
leuAUnannotated protein; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate); Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 1 subfamily. (521 aa)
mgtEUnannotated protein; Acts as a magnesium transporter. (453 aa)
CMV25_03640Unannotated protein; Belongs to the glutamine synthetase family. (702 aa)
GCA_001591765_00602Unannotated protein. (164 aa)
nadDUnannotated protein; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD). (188 aa)
folKUnannotated protein. (166 aa)
pheAUnannotated protein. (275 aa)
CMV25_10055Unannotated protein. (416 aa)
CMV25_10190Unannotated protein; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily. (291 aa)
CMV25_10230Unannotated protein. (305 aa)
CMV25_10245Unannotated protein. (448 aa)
CMV25_10320Unannotated protein. (289 aa)
CMV25_04485Unannotated protein. (227 aa)
ispEUnannotated protein; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol. (283 aa)
rplVUnannotated protein; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. (114 aa)
rplPUnannotated protein; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. (142 aa)
adkUnannotated protein; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family. (215 aa)
rpsMUnannotated protein; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family. (121 aa)
GCA_001591765_00830Unannotated protein. (455 aa)
CMV25_10865Unannotated protein; Belongs to the ribF family. (298 aa)
argBUnannotated protein; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily. (292 aa)
argCUnannotated protein; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 1 subfamily. (345 aa)
nadCUnannotated protein; Belongs to the NadC/ModD family. (283 aa)
purFUnannotated protein; Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine; In the C-terminal section; belongs to the purine/pyrimidine phosphoribosyltransferase family. (475 aa)
CMV25_07845Unannotated protein. (334 aa)
ychFUnannotated protein; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner. (371 aa)
CMV25_03280Unannotated protein. (1037 aa)
CMV25_03265Unannotated protein. (162 aa)
CMV25_04695Unannotated protein. (378 aa)
nadD-2Unannotated protein; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD). (200 aa)
CMV25_07955Unannotated protein. (378 aa)
CMV25_07470Unannotated protein. (298 aa)
CMV25_08325Unannotated protein. (677 aa)
CMV25_10620Unannotated protein. (289 aa)
CMV25_02655Unannotated protein. (195 aa)
CMV25_02640Unannotated protein. (268 aa)
fhsUnannotated protein; Belongs to the formate--tetrahydrofolate ligase family. (556 aa)
GCA_001591765_01867Unannotated protein. (598 aa)
CMV25_04875Unannotated protein. (418 aa)
GCA_001591765_01886Unannotated protein. (163 aa)
CMV25_08100Unannotated protein. (202 aa)
CMV25_01035Unannotated protein. (1500 aa)
CMV25_07545Unannotated protein; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family. (398 aa)
CMV25_01960Unannotated protein. (420 aa)
CMV25_01685Unannotated protein. (326 aa)
arsAUnannotated protein. (571 aa)
CMV25_00380Unannotated protein. (106 aa)
CMV25_09495Unannotated protein. (173 aa)
CMV25_08015Unannotated protein. (544 aa)
CMV25_08025Unannotated protein. (159 aa)
CMV25_08060Unannotated protein. (377 aa)
CMV25_00255Unannotated protein. (648 aa)
purDUnannotated protein; Belongs to the GARS family. (417 aa)
trxAUnannotated protein; Belongs to the thioredoxin family. (105 aa)
GCA_001591765_01330Unannotated protein. (129 aa)
CMV25_09700Unannotated protein. (283 aa)
GCA_001591765_01338Unannotated protein. (176 aa)
rnzUnannotated protein; Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA; Belongs to the RNase Z family. (313 aa)
CMV25_04545Unannotated protein; Catalyzes the conversion of N-acetyl-diaminopimelate to diaminopimelate and acetate. (381 aa)
CMV25_04595Unannotated protein. (889 aa)
CMV25_08190Unannotated protein. (128 aa)
dinGUnannotated protein; 3'-5' exonuclease. (782 aa)
serCUnannotated protein; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine. (365 aa)
truAUnannotated protein; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs. (252 aa)
Your Current Organism:
Lactococcus raffinolactis NBRC100932
NCBI taxonomy Id: 1348633
Other names: L. raffinolactis NBRC 100932, Lactococcus raffinolactis NBRC 100932
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