STRINGSTRING
GCA_001591765_00776 GCA_001591765_00776 GCA_001591765_00777 GCA_001591765_00777 CMV25_04260 CMV25_04260 ilvD ilvD ilvB ilvB ilvN ilvN ilvC ilvC ilvA ilvA CMV25_10810 CMV25_10810 acnA acnA CMV25_10820 CMV25_10820 argB argB argD argD argJ argJ argC argC GCA_001591765_00902 GCA_001591765_00902 CMV25_00630 CMV25_00630 gpmA gpmA tpiA tpiA CMV25_07935 CMV25_07935 CMV25_07950 CMV25_07950 CMV25_07985 CMV25_07985 CMV25_07990 CMV25_07990 prs prs cysE cysE aroD aroD GCA_001591765_01330 GCA_001591765_01330 CMV25_09700 CMV25_09700 CMV25_09730 CMV25_09730 aroE aroE aroB aroB eno eno CMV25_02670 CMV25_02670 fba fba CMV25_04545 CMV25_04545 dapD dapD pfkA pfkA pyk pyk CMV25_10465 CMV25_10465 thrB thrB prs-2 prs-2 CMV25_08645 CMV25_08645 serC serC aroC aroC CMV25_09820 CMV25_09820 aroA aroA CMV25_09875 CMV25_09875 alsS alsS glyA glyA argF argF CMV25_08345 CMV25_08345 CMV25_10620 CMV25_10620 CMV25_10615 CMV25_10615 dapB dapB metE metE cysK cysK hisE hisE hisI hisI hisF hisF hisA hisA hisH hisH hisB hisB serB serB hisD hisD hisG hisG hisZ hisZ hisC hisC metK metK CMV25_04960 CMV25_04960 GCA_001591765_01887 GCA_001591765_01887 CMV25_07005 CMV25_07005 CMV25_06985 CMV25_06985 CMV25_01030 CMV25_01030 CMV25_01035 CMV25_01035 kbaY kbaY CMV25_03625 CMV25_03625 GCA_001591765_02059 GCA_001591765_02059 pgk pgk luxS luxS CMV25_06390 CMV25_06390 rsmA rsmA argG argG argH argH CMV25_06685 CMV25_06685 CMV25_08910 CMV25_08910 CMV25_08920 CMV25_08920 CMV25_09205 CMV25_09205 tkt tkt asd asd dapA dapA rex rex metAA metAA CMV25_01575 CMV25_01575 sdaAA sdaAA sdaAB sdaAB CMV25_01330 CMV25_01330 trpD trpD trpC trpC trpF trpF trpB trpB trpA trpA pepV pepV proB proB proA proA GCA_001591765_00480 GCA_001591765_00480 leuD leuD leuC leuC leuB leuB leuA leuA CMV25_03640 CMV25_03640 glnA glnA CMV25_03765 CMV25_03765 proC proC CMV25_03910 CMV25_03910 CMV25_03915 CMV25_03915 rpiA rpiA CMV25_03995 CMV25_03995 gap gap aroK aroK pheA pheA CMV25_10055 CMV25_10055 CMV25_10175 CMV25_10175
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
GCA_001591765_00776Unannotated protein. (482 aa)
GCA_001591765_00777Unannotated protein. (180 aa)
CMV25_04260Unannotated protein. (496 aa)
ilvDUnannotated protein; Belongs to the IlvD/Edd family. (570 aa)
ilvBUnannotated protein. (567 aa)
ilvNUnannotated protein. (158 aa)
ilvCUnannotated protein; Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol-acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3-dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3-hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate. (340 aa)
ilvAUnannotated protein; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. (416 aa)
CMV25_10810Unannotated protein. (410 aa)
acnAUnannotated protein; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate. (869 aa)
CMV25_10820Unannotated protein; Belongs to the citrate synthase family. (441 aa)
argBUnannotated protein; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily. (292 aa)
argDUnannotated protein. (378 aa)
argJUnannotated protein; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of N-acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate. Belongs to the ArgJ family. (399 aa)
argCUnannotated protein; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 1 subfamily. (345 aa)
GCA_001591765_00902Unannotated protein. (137 aa)
CMV25_00630Unannotated protein. (331 aa)
gpmAUnannotated protein; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate. (231 aa)
tpiAUnannotated protein; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family. (252 aa)
CMV25_07935Unannotated protein; Belongs to the PHP hydrolase family. HisK subfamily. (259 aa)
CMV25_07950Unannotated protein; Belongs to the ribulose-phosphate 3-epimerase family. (215 aa)
CMV25_07985Unannotated protein. (369 aa)
CMV25_07990Unannotated protein. (388 aa)
prsUnannotated protein; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily. (321 aa)
cysEUnannotated protein. (197 aa)
aroDUnannotated protein; Involved in the third step of the chorismate pathway, which leads to the biosynthesis of aromatic amino acids. Catalyzes the cis- dehydration of 3-dehydroquinate (DHQ) and introduces the first double bond of the aromatic ring to yield 3-dehydroshikimate. Belongs to the type-I 3-dehydroquinase family. (216 aa)
GCA_001591765_01330Unannotated protein. (129 aa)
CMV25_09700Unannotated protein. (283 aa)
CMV25_09730Unannotated protein. (389 aa)
aroEUnannotated protein; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA). (272 aa)
aroBUnannotated protein; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). (355 aa)
enoUnannotated protein; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family. (441 aa)
CMV25_02670Unannotated protein; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second. (1137 aa)
fbaUnannotated protein. (293 aa)
CMV25_04545Unannotated protein; Catalyzes the conversion of N-acetyl-diaminopimelate to diaminopimelate and acetate. (381 aa)
dapDUnannotated protein; Catalyzes the transfer of an acetyl group from acetyl-CoA to tetrahydrodipicolinate. (231 aa)
pfkAUnannotated protein; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis. (335 aa)
pykUnannotated protein; Belongs to the pyruvate kinase family. (500 aa)
CMV25_10465Unannotated protein. (426 aa)
thrBUnannotated protein; Catalyzes the ATP-dependent phosphorylation of L-homoserine to L-homoserine phosphate; Belongs to the GHMP kinase family. Homoserine kinase subfamily. (290 aa)
prs-2Unannotated protein; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily. (327 aa)
CMV25_08645Unannotated protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. (393 aa)
serCUnannotated protein; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine. (365 aa)
aroCUnannotated protein; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. (388 aa)
CMV25_09820Unannotated protein. (367 aa)
aroAUnannotated protein; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. (426 aa)
CMV25_09875Unannotated protein. (197 aa)
alsSUnannotated protein; Belongs to the TPP enzyme family. (552 aa)
glyAUnannotated protein; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. (417 aa)
argFUnannotated protein; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline. (333 aa)
CMV25_08345Unannotated protein; Belongs to the aspartokinase family. (450 aa)
CMV25_10620Unannotated protein. (289 aa)
CMV25_10615Unannotated protein. (322 aa)
dapBUnannotated protein; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family. (254 aa)
metEUnannotated protein; Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation; Belongs to the vitamin-B12 independent methionine synthase family. (751 aa)
cysKUnannotated protein; Belongs to the cysteine synthase/cystathionine beta- synthase family. (308 aa)
hisEUnannotated protein. (104 aa)
hisIUnannotated protein; Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP. (121 aa)
hisFUnannotated protein; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit. (252 aa)
hisAUnannotated protein. (237 aa)
hisHUnannotated protein; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the synthesis of IGP and AICAR. The resulting ammonia molecule is channeled to the active site of HisF. (208 aa)
hisBUnannotated protein. (194 aa)
serBUnannotated protein. (217 aa)
hisDUnannotated protein; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine. (430 aa)
hisGUnannotated protein; Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity. Belongs to the ATP phosphoribosyltransferase family. Short subfamily. (213 aa)
hisZUnannotated protein; Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine. (319 aa)
hisCUnannotated protein; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily. (349 aa)
metKUnannotated protein; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme. (395 aa)
CMV25_04960Unannotated protein. (391 aa)
GCA_001591765_01887Unannotated protein. (170 aa)
CMV25_07005Unannotated protein. (447 aa)
CMV25_06985Unannotated protein. (152 aa)
CMV25_01030Unannotated protein. (479 aa)
CMV25_01035Unannotated protein. (1500 aa)
kbaYUnannotated protein. (281 aa)
CMV25_03625Unannotated protein. (89 aa)
GCA_001591765_02059Unannotated protein. (193 aa)
pgkUnannotated protein; Belongs to the phosphoglycerate kinase family. (398 aa)
luxSUnannotated protein; Involved in the synthesis of autoinducer 2 (AI-2) which is secreted by bacteria and is used to communicate both the cell density and the metabolic potential of the environment. The regulation of gene expression in response to changes in cell density is called quorum sensing. Catalyzes the transformation of S-ribosylhomocysteine (RHC) to homocysteine (HC) and 4,5-dihydroxy-2,3-pentadione (DPD). Belongs to the LuxS family. (157 aa)
CMV25_06390Unannotated protein; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. (340 aa)
rsmAUnannotated protein; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. (290 aa)
argGUnannotated protein; Belongs to the argininosuccinate synthase family. Type 1 subfamily. (402 aa)
argHUnannotated protein. (464 aa)
CMV25_06685Unannotated protein. (476 aa)
CMV25_08910Unannotated protein. (228 aa)
CMV25_08920Unannotated protein. (795 aa)
CMV25_09205Unannotated protein. (381 aa)
tktUnannotated protein; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate. (663 aa)
asdUnannotated protein; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family. (360 aa)
dapAUnannotated protein; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA). (293 aa)
rexUnannotated protein; Modulates transcription in response to changes in cellular NADH/NAD(+) redox state. (221 aa)
metAAUnannotated protein; Transfers an acetyl group from acetyl-CoA to L-homoserine, forming acetyl-L-homoserine; Belongs to the MetA family. (310 aa)
CMV25_01575Unannotated protein; Belongs to the UPF0237 family. (88 aa)
sdaAAUnannotated protein; Belongs to the iron-sulfur dependent L-serine dehydratase family. (289 aa)
sdaABUnannotated protein; Belongs to the iron-sulfur dependent L-serine dehydratase family. (223 aa)
CMV25_01330Unannotated protein. (185 aa)
trpDUnannotated protein; Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'- phosphoribosyl)-anthranilate (PRA). (334 aa)
trpCUnannotated protein; Belongs to the TrpC family. (256 aa)
trpFUnannotated protein; Belongs to the TrpF family. (205 aa)
trpBUnannotated protein; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine. (412 aa)
trpAUnannotated protein; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family. (257 aa)
pepVUnannotated protein. (472 aa)
proBUnannotated protein; Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate. (266 aa)
proAUnannotated protein; Catalyzes the NADPH-dependent reduction of L-glutamate 5- phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5-carboxylate. Belongs to the gamma-glutamyl phosphate reductase family. (413 aa)
GCA_001591765_00480Unannotated protein. (395 aa)
leuDUnannotated protein; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. Belongs to the LeuD family. LeuD type 1 subfamily. (196 aa)
leuCUnannotated protein; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. (457 aa)
leuBUnannotated protein; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate. (345 aa)
leuAUnannotated protein; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate); Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 1 subfamily. (521 aa)
CMV25_03640Unannotated protein; Belongs to the glutamine synthetase family. (702 aa)
glnAUnannotated protein; Belongs to the glutamine synthetase family. (446 aa)
CMV25_03765Unannotated protein; Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S-adenosylhomocysteine (SAH/AdoHcy) to adenine and the corresponding thioribose, 5'- methylthioribose and S-ribosylhomocysteine, respectively. Belongs to the PNP/UDP phosphorylase family. MtnN subfamily. (226 aa)
proCUnannotated protein; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline. (259 aa)
CMV25_03910Unannotated protein; Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D-arabino- heptulosonate-7-phosphate (DAHP). (342 aa)
CMV25_03915Unannotated protein; Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D-arabino- heptulosonate-7-phosphate (DAHP). (341 aa)
rpiAUnannotated protein; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate. (225 aa)
CMV25_03995Unannotated protein. (196 aa)
gapUnannotated protein; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family. (337 aa)
aroKUnannotated protein; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family. (160 aa)
pheAUnannotated protein. (275 aa)
CMV25_10055Unannotated protein. (416 aa)
CMV25_10175Unannotated protein. (343 aa)
Your Current Organism:
Lactococcus raffinolactis NBRC100932
NCBI taxonomy Id: 1348633
Other names: L. raffinolactis NBRC 100932, Lactococcus raffinolactis NBRC 100932
Server load: low (26%) [HD]