STRINGSTRING
C1M56_03245 C1M56_03245 uvrB uvrB deaD deaD C1M56_13360 C1M56_13360 C1M56_00180 C1M56_00180 recG recG clpB clpB hslU hslU C1M56_08725 C1M56_08725 C1M56_08540 C1M56_08540 ftsH ftsH GCA_000740015_02440 GCA_000740015_02440 C1M56_07130 C1M56_07130 fliI fliI ychF ychF rhlE rhlE C1M56_14105 C1M56_14105 C1M56_14385 C1M56_14385 C1M56_14905 C1M56_14905 C1M56_17865 C1M56_17865 C1M56_12140 C1M56_12140 GCA_000740015_03251 GCA_000740015_03251 C1M56_13400 C1M56_13400 C1M56_04295 C1M56_04295 recB recB srmB srmB zapE zapE clpV clpV GCA_000740015_00022 GCA_000740015_00022 GCA_000740015_00045 GCA_000740015_00045 C1M56_20130 C1M56_20130 mutL mutL rhlB rhlB rep rep uvrD uvrD hscA hscA uvrA uvrA GCA_000740015_00787 GCA_000740015_00787 btuD btuD C1M56_17180 C1M56_17180 GCA_000740015_01399 GCA_000740015_01399 ruvB ruvB ruvA ruvA dinG dinG lon lon clpX clpX htpG htpG minD minD
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
C1M56_03245Unannotated protein; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family. (357 aa)
uvrBUnannotated protein; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the [...] (676 aa)
deaDUnannotated protein; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation. (633 aa)
C1M56_13360Unannotated protein; Belongs to the DEAD box helicase family. (416 aa)
C1M56_00180Unannotated protein. (333 aa)
recGUnannotated protein; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily. (692 aa)
clpBUnannotated protein; Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE; Belongs to the ClpA/ClpB family. (857 aa)
hslUUnannotated protein; ATPase subunit of a proteasome-like degradation complex; this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis. (443 aa)
C1M56_08725Unannotated protein. (555 aa)
C1M56_08540Unannotated protein. (406 aa)
ftsHUnannotated protein; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family. (654 aa)
GCA_000740015_02440Unannotated protein. (186 aa)
C1M56_07130Unannotated protein. (295 aa)
fliIUnannotated protein. (440 aa)
ychFUnannotated protein; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner. (363 aa)
rhlEUnannotated protein; DEAD-box RNA helicase involved in ribosome assembly. Has RNA- dependent ATPase activity and unwinds double-stranded RNA. (531 aa)
C1M56_14105Unannotated protein. (256 aa)
C1M56_14385Unannotated protein. (792 aa)
C1M56_14905Unannotated protein. (638 aa)
C1M56_17865Unannotated protein. (449 aa)
C1M56_12140Unannotated protein; Belongs to the ClpA/ClpB family. (755 aa)
GCA_000740015_03251Unannotated protein. (709 aa)
C1M56_13400Unannotated protein. (318 aa)
C1M56_04295Unannotated protein. (922 aa)
recBUnannotated protein; A helicase/nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme [...] (1206 aa)
srmBUnannotated protein; DEAD-box RNA helicase involved in the assembly of the 50S ribosomal subunit at low temperature. Exhibits RNA-stimulated ATP hydrolysis and RNA unwinding activity; Belongs to the DEAD box helicase family. SrmB subfamily. (417 aa)
zapEUnannotated protein; Reduces the stability of FtsZ polymers in the presence of ATP. (367 aa)
clpVUnannotated protein; Belongs to the ClpA/ClpB family. (869 aa)
GCA_000740015_00022Unannotated protein. (585 aa)
GCA_000740015_00045Unannotated protein. (714 aa)
C1M56_20130Unannotated protein; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily. (470 aa)
mutLUnannotated protein; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. (666 aa)
rhlBUnannotated protein; DEAD-box RNA helicase involved in RNA degradation. Has RNA- dependent ATPase activity and unwinds double-stranded RNA. Belongs to the DEAD box helicase family. RhlB subfamily. (433 aa)
repUnannotated protein; Rep helicase is a single-stranded DNA-dependent ATPase involved in DNA replication; it can initiate unwinding at a nick in the DNA. It binds to the single-stranded DNA and acts in a progressive fashion along the DNA in the 3' to 5' direction. (671 aa)
uvrDUnannotated protein. (724 aa)
hscAUnannotated protein; Chaperone involved in the maturation of iron-sulfur cluster- containing proteins. Has a low intrinsic ATPase activity which is markedly stimulated by HscB. (617 aa)
uvrAUnannotated protein; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. (940 aa)
GCA_000740015_00787Unannotated protein. (449 aa)
btuDUnannotated protein; Part of the ABC transporter complex BtuCDF involved in vitamin B12 import. Responsible for energy coupling to the transport system. (251 aa)
C1M56_17180Unannotated protein. (698 aa)
GCA_000740015_01399Unannotated protein. (406 aa)
ruvBUnannotated protein; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. (334 aa)
ruvAUnannotated protein; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. (205 aa)
dinGUnannotated protein; DNA-dependent ATPase and 5'-3' DNA helicase. (703 aa)
lonUnannotated protein; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner. (784 aa)
clpXUnannotated protein; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP. (426 aa)
htpGUnannotated protein; Molecular chaperone. Has ATPase activity. (634 aa)
minDUnannotated protein. (270 aa)
Your Current Organism:
Vibrio diazotrophicus
NCBI taxonomy Id: 1348635
Other names: V. diazotrophicus NBRC 103148, Vibrio diazotrophicus NBRC 103148
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.