STRINGSTRING
msbA msbA C1M56_20130 C1M56_20130 GCA_000740015_00173 GCA_000740015_00173 C1M56_11020 C1M56_11020 rho rho ftsE ftsE C1M56_18925 C1M56_18925 C1M56_18915 C1M56_18915 C1M56_18800 C1M56_18800 pstB pstB der der GCA_000740015_00465 GCA_000740015_00465 dnaA dnaA C1M56_18470 C1M56_18470 atpD atpD C1M56_17930 C1M56_17930 C1M56_18245 C1M56_18245 metN metN GCA_000740015_00662 GCA_000740015_00662 C1M56_15560 C1M56_15560 C1M56_15565 C1M56_15565 GCA_000740015_00787 GCA_000740015_00787 GCA_000740015_00792 GCA_000740015_00792 C1M56_05800 C1M56_05800 C1M56_05795 C1M56_05795 btuD btuD C1M56_11105 C1M56_11105 araG araG C1M56_11460 C1M56_11460 C1M56_16985 C1M56_16985 C1M56_16900 C1M56_16900 C1M56_16890 C1M56_16890 C1M56_16805 C1M56_16805 macB macB C1M56_12735 C1M56_12735 modC modC C1M56_17400 C1M56_17400 C1M56_10135 C1M56_10135 ruvB ruvB C1M56_06205 C1M56_06205 lolD lolD lon lon clpX clpX C1M56_06495 C1M56_06495 dnaX dnaX C1M56_03305 C1M56_03305 fbpC fbpC pstB-2 pstB-2 malK malK GCA_000740015_01809 GCA_000740015_01809 ntrC ntrC gspE gspE hslU hslU C1M56_09615 C1M56_09615 C1M56_09385 C1M56_09385 C1M56_09100 C1M56_09100 thiQ thiQ lptB lptB C1M56_08950 C1M56_08950 C1M56_08805 C1M56_08805 clpB clpB C1M56_08725 C1M56_08725 C1M56_08545 C1M56_08545 C1M56_08505 C1M56_08505 radA radA ftsH ftsH C1M56_08310 C1M56_08310 C1M56_08305 C1M56_08305 C1M56_08275 C1M56_08275 C1M56_08170 C1M56_08170 C1M56_07985 C1M56_07985 ccmA ccmA znuC znuC GCA_000740015_02527 GCA_000740015_02527 fliI fliI C1M56_07425 C1M56_07425 C1M56_07435 C1M56_07435 GCA_000740015_02652 GCA_000740015_02652 urtD urtD urtE urtE C1M56_10250 C1M56_10250 C1M56_10510 C1M56_10510 C1M56_10520 C1M56_10520 xylG xylG C1M56_10635 C1M56_10635 C1M56_10640 C1M56_10640 ugpC ugpC C1M56_14210 C1M56_14210 C1M56_14225 C1M56_14225 potA potA C1M56_14905 C1M56_14905 C1M56_14845 C1M56_14845 C1M56_14750 C1M56_14750 C1M56_14650 C1M56_14650 C1M56_14605 C1M56_14605 oppD oppD C1M56_17800 C1M56_17800 C1M56_17835 C1M56_17835 C1M56_17865 C1M56_17865 C1M56_11955 C1M56_11955 C1M56_12140 C1M56_12140 GCA_000740015_03214 GCA_000740015_03214 C1M56_12275 C1M56_12275 C1M56_12480 C1M56_12480 C1M56_12485 C1M56_12485 pspF pspF rbsA rbsA C1M56_12610 C1M56_12610 C1M56_16440 C1M56_16440 C1M56_16365 C1M56_16365 C1M56_16330 C1M56_16330 C1M56_16195 C1M56_16195 C1M56_16040 C1M56_16040 C1M56_00545 C1M56_00545 recD recD C1M56_04840 C1M56_04840 C1M56_04955 C1M56_04955 recA recA cysA cysA hmuV hmuV GCA_000740015_03914 GCA_000740015_03914 C1M56_02505 C1M56_02505 nifA nifA C1M56_02350 C1M56_02350 modC-2 modC-2 C1M56_02170 C1M56_02170 C1M56_01600 C1M56_01600 C1M56_01730 C1M56_01730 clpV clpV C1M56_01505 C1M56_01505 C1M56_01160 C1M56_01160 C1M56_01065 C1M56_01065 C1M56_00715 C1M56_00715 C1M56_00620 C1M56_00620
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
msbAUnannotated protein; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation. (594 aa)
C1M56_20130Unannotated protein; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily. (470 aa)
GCA_000740015_00173Unannotated protein. (486 aa)
C1M56_11020Unannotated protein. (394 aa)
rhoUnannotated protein; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. (419 aa)
ftsEUnannotated protein; Part of the ABC transporter FtsEX involved in cellular division. (224 aa)
C1M56_18925Unannotated protein. (261 aa)
C1M56_18915Unannotated protein. (609 aa)
C1M56_18800Unannotated protein; Belongs to the ABC transporter superfamily. (571 aa)
pstBUnannotated protein; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family. (272 aa)
derUnannotated protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. (494 aa)
GCA_000740015_00465Unannotated protein. (508 aa)
dnaAUnannotated protein; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. (467 aa)
C1M56_18470Unannotated protein. (245 aa)
atpDUnannotated protein; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits. (467 aa)
C1M56_17930Unannotated protein. (345 aa)
C1M56_18245Unannotated protein. (574 aa)
metNUnannotated protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system. (344 aa)
GCA_000740015_00662Unannotated protein. (371 aa)
C1M56_15560Unannotated protein; Belongs to the ABC transporter superfamily. (328 aa)
C1M56_15565Unannotated protein; Belongs to the ABC transporter superfamily. (317 aa)
GCA_000740015_00787Unannotated protein. (449 aa)
GCA_000740015_00792Unannotated protein. (443 aa)
C1M56_05800Unannotated protein. (573 aa)
C1M56_05795Unannotated protein. (600 aa)
btuDUnannotated protein; Part of the ABC transporter complex BtuCDF involved in vitamin B12 import. Responsible for energy coupling to the transport system. (251 aa)
C1M56_11105Unannotated protein. (501 aa)
araGUnannotated protein; Part of the ABC transporter complex AraFGH involved in arabinose import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Arabinose importer (TC 3.A.1.2.2) family. (504 aa)
C1M56_11460Unannotated protein; Belongs to the ABC transporter superfamily. (363 aa)
C1M56_16985Unannotated protein; Belongs to the ABC transporter superfamily. (361 aa)
C1M56_16900Unannotated protein. (522 aa)
C1M56_16890Unannotated protein. (502 aa)
C1M56_16805Unannotated protein. (514 aa)
macBUnannotated protein; Part of the tripartite efflux system MacAB-TolC. MacB is a non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides. (652 aa)
C1M56_12735Unannotated protein. (223 aa)
modCUnannotated protein; Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Molybdate importer (TC 3.A.1.8) family. (370 aa)
C1M56_17400Unannotated protein. (552 aa)
C1M56_10135Unannotated protein. (225 aa)
ruvBUnannotated protein; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. (334 aa)
C1M56_06205Unannotated protein. (256 aa)
lolDUnannotated protein; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner. (228 aa)
lonUnannotated protein; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner. (784 aa)
clpXUnannotated protein; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP. (426 aa)
C1M56_06495Unannotated protein. (446 aa)
dnaXUnannotated protein; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. (714 aa)
C1M56_03305Unannotated protein. (466 aa)
fbpCUnannotated protein; Part of the ABC transporter complex FbpABC involved in Fe(3+) ions import. Responsible for energy coupling to the transport system. (351 aa)
pstB-2Unannotated protein; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family. (249 aa)
malKUnannotated protein; Part of the ABC transporter complex MalEFGK involved in maltose/maltodextrin import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Maltooligosaccharide importer (TC 3.A.1.1.1) family. (374 aa)
GCA_000740015_01809Unannotated protein. (725 aa)
ntrCUnannotated protein; Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes. (467 aa)
gspEUnannotated protein; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins. (496 aa)
hslUUnannotated protein; ATPase subunit of a proteasome-like degradation complex; this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis. (443 aa)
C1M56_09615Unannotated protein. (483 aa)
C1M56_09385Unannotated protein. (640 aa)
C1M56_09100Unannotated protein. (238 aa)
thiQUnannotated protein; Part of the ABC transporter complex ThiBPQ involved in thiamine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Thiamine importer (TC 3.A.1.19.1) family. (234 aa)
lptBUnannotated protein. (241 aa)
C1M56_08950Unannotated protein. (267 aa)
C1M56_08805Unannotated protein. (280 aa)
clpBUnannotated protein; Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE; Belongs to the ClpA/ClpB family. (857 aa)
C1M56_08725Unannotated protein. (555 aa)
C1M56_08545Unannotated protein. (496 aa)
C1M56_08505Unannotated protein. (450 aa)
radAUnannotated protein; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function. (459 aa)
ftsHUnannotated protein; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family. (654 aa)
C1M56_08310Unannotated protein; Belongs to the ABC transporter superfamily. (327 aa)
C1M56_08305Unannotated protein; Belongs to the ABC transporter superfamily. (331 aa)
C1M56_08275Unannotated protein; Belongs to the ABC transporter superfamily. (342 aa)
C1M56_08170Unannotated protein. (303 aa)
C1M56_07985Unannotated protein. (541 aa)
ccmAUnannotated protein; Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. CcmA exporter (TC 3.A.1.107) family. (206 aa)
znuCUnannotated protein; Part of the ABC transporter complex ZnuABC involved in zinc import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Zinc importer (TC 3.A.1.15.5) family. (262 aa)
GCA_000740015_02527Unannotated protein. (366 aa)
fliIUnannotated protein. (440 aa)
C1M56_07425Unannotated protein. (469 aa)
C1M56_07435Unannotated protein. (487 aa)
GCA_000740015_02652Unannotated protein. (360 aa)
urtDUnannotated protein. (279 aa)
urtEUnannotated protein. (231 aa)
C1M56_10250Unannotated protein; Belongs to the ABC transporter superfamily. (536 aa)
C1M56_10510Unannotated protein; Belongs to the ABC transporter superfamily. (358 aa)
C1M56_10520Unannotated protein; Belongs to the ABC transporter superfamily. (352 aa)
xylGUnannotated protein; Part of the ABC transporter complex XylFGH involved in xylose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Xylose importer (TC 3.A.1.2.4) family. (507 aa)
C1M56_10635Unannotated protein. (594 aa)
C1M56_10640Unannotated protein. (579 aa)
ugpCUnannotated protein; Part of the ABC transporter complex UgpABCE involved in sn- glycerol-3-phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. sn-glycerol-3- phosphate importer (TC 3.A.1.1.3) family. (367 aa)
C1M56_14210Unannotated protein. (236 aa)
C1M56_14225Unannotated protein. (484 aa)
potAUnannotated protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family. (371 aa)
C1M56_14905Unannotated protein. (638 aa)
C1M56_14845Unannotated protein. (599 aa)
C1M56_14750Unannotated protein. (1309 aa)
C1M56_14650Unannotated protein. (251 aa)
C1M56_14605Unannotated protein. (509 aa)
oppDUnannotated protein; Belongs to the ABC transporter superfamily. (323 aa)
C1M56_17800Unannotated protein; Belongs to the ABC transporter superfamily. (330 aa)
C1M56_17835Unannotated protein. (264 aa)
C1M56_17865Unannotated protein. (449 aa)
C1M56_11955Unannotated protein. (275 aa)
C1M56_12140Unannotated protein; Belongs to the ClpA/ClpB family. (755 aa)
GCA_000740015_03214Unannotated protein. (306 aa)
C1M56_12275Unannotated protein; Belongs to the ABC transporter superfamily. (363 aa)
C1M56_12480Unannotated protein. (262 aa)
C1M56_12485Unannotated protein; Belongs to the ABC transporter superfamily. (331 aa)
pspFUnannotated protein. (333 aa)
rbsAUnannotated protein; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family. (501 aa)
C1M56_12610Unannotated protein. (308 aa)
C1M56_16440Unannotated protein; Belongs to the ABC transporter superfamily. (562 aa)
C1M56_16365Unannotated protein. (250 aa)
C1M56_16330Unannotated protein. (395 aa)
C1M56_16195Unannotated protein. (275 aa)
C1M56_16040Unannotated protein; Belongs to the ABC transporter superfamily. (378 aa)
C1M56_00545Unannotated protein; Belongs to the ABC transporter superfamily. (376 aa)
recDUnannotated protein; A helicase/nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme [...] (721 aa)
C1M56_04840Unannotated protein. (443 aa)
C1M56_04955Unannotated protein. (522 aa)
recAUnannotated protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. (349 aa)
cysAUnannotated protein; Part of the ABC transporter complex CysAWTP involved in sulfate/thiosulfate import. Responsible for energy coupling to the transport system. (376 aa)
hmuVUnannotated protein; Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system. (279 aa)
GCA_000740015_03914Unannotated protein. (255 aa)
C1M56_02505Unannotated protein. (531 aa)
nifAUnannotated protein. (545 aa)
C1M56_02350Unannotated protein. (527 aa)
modC-2Unannotated protein; Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Molybdate importer (TC 3.A.1.8) family. (367 aa)
C1M56_02170Unannotated protein. (474 aa)
C1M56_01600Unannotated protein. (617 aa)
C1M56_01730Unannotated protein. (704 aa)
clpVUnannotated protein; Belongs to the ClpA/ClpB family. (869 aa)
C1M56_01505Unannotated protein. (524 aa)
C1M56_01160Unannotated protein. (255 aa)
C1M56_01065Unannotated protein. (583 aa)
C1M56_00715Unannotated protein. (216 aa)
C1M56_00620Unannotated protein. (252 aa)
Your Current Organism:
Vibrio diazotrophicus
NCBI taxonomy Id: 1348635
Other names: V. diazotrophicus NBRC 103148, Vibrio diazotrophicus NBRC 103148
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