(6 nodes) Mixed, incl. TraK protein, and Type IV conjugative transfer system, protein TraL network (Novosphingobium malaysiense)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	KHK93383.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (108 aa)
	KHK93384.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (126 aa)
	KHK93703.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (173 aa)
	KHK93388.1	Conjugal transfer protein TraK; Derived by automated computational analysis using gene prediction method: Protein Homology. (271 aa)
	KHK93390.1	Conjugal transfer protein TraL; Derived by automated computational analysis using gene prediction method: Protein Homology. (95 aa)
	KHK93704.1	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (110 aa)

Your Current Organism:

Novosphingobium malaysiense

NCBI taxonomy Id: 1348853
Other names: DSM 27798, MCCC 1A00645, N. malaysiense, NBRC 109947, Novosphingobium malaysiense Lee et al. 2014, Novosphingobium sp. 273, strain MUSC 273

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KHK93383.1	KHK93384.1	LK12_03595	LK12_03600	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.660
KHK93383.1	KHK93388.1	LK12_03595	LK12_03625	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein TraK; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.617
KHK93383.1	KHK93390.1	LK12_03595	LK12_03635	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein TraL; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.551
KHK93383.1	KHK93703.1	LK12_03595	LK12_03610	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.722
KHK93383.1	KHK93704.1	LK12_03595	LK12_03640	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.540
KHK93384.1	KHK93383.1	LK12_03600	LK12_03595	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.660
KHK93384.1	KHK93388.1	LK12_03600	LK12_03625	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein TraK; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.667
KHK93384.1	KHK93390.1	LK12_03600	LK12_03635	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein TraL; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.657
KHK93384.1	KHK93703.1	LK12_03600	LK12_03610	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.804
KHK93384.1	KHK93704.1	LK12_03600	LK12_03640	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.580
KHK93388.1	KHK93383.1	LK12_03625	LK12_03595	Conjugal transfer protein TraK; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.617
KHK93388.1	KHK93384.1	LK12_03625	LK12_03600	Conjugal transfer protein TraK; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.667
KHK93388.1	KHK93390.1	LK12_03625	LK12_03635	Conjugal transfer protein TraK; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein TraL; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.785
KHK93388.1	KHK93703.1	LK12_03625	LK12_03610	Conjugal transfer protein TraK; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.714
KHK93388.1	KHK93704.1	LK12_03625	LK12_03640	Conjugal transfer protein TraK; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.725
KHK93390.1	KHK93383.1	LK12_03635	LK12_03595	Conjugal transfer protein TraL; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.551
KHK93390.1	KHK93384.1	LK12_03635	LK12_03600	Conjugal transfer protein TraL; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.657
KHK93390.1	KHK93388.1	LK12_03635	LK12_03625	Conjugal transfer protein TraL; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein TraK; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.785
KHK93390.1	KHK93703.1	LK12_03635	LK12_03610	Conjugal transfer protein TraL; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.657
KHK93390.1	KHK93704.1	LK12_03635	LK12_03640	Conjugal transfer protein TraL; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.712

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