STRINGSTRING
GJA_103 GJA_103 GJA_104 GJA_104 GJA_105 GJA_105 rbsR rbsR rbsK rbsK rbsD rbsD GJA_1465 GJA_1465 DSF1 DSF1 xylB xylB GJA_1471 GJA_1471 GJA_1472 GJA_1472 GJA_2762 GJA_2762 GJA_2763 GJA_2763 GJA_283 GJA_283 CoA CoA GJA_285 GJA_285 GJA_286 GJA_286 GJA_287 GJA_287 GJA_289 GJA_289 GJA_291 GJA_291 GJA_293 GJA_293 GJA_2982 GJA_2982 GJA_2983 GJA_2983 GJA_2984 GJA_2984 GJA_2985 GJA_2985 GJA_2986 GJA_2986 GJA_2987 GJA_2987 GJA_2988 GJA_2988 GJA_2989 GJA_2989 idhA idhA GJA_2991 GJA_2991 GJA_2999 GJA_2999 GJA_3001 GJA_3001 ydgJ ydgJ GJA_5122 GJA_5122 GJA_5123 GJA_5123 GJA_5124 GJA_5124 GJA_5125 GJA_5125 GJA_5126 GJA_5126 GJA_5127 GJA_5127
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
GJA_103Periplasmic binding s and sugar binding domain of the LacI family protein. (313 aa)
GJA_104ABC transporter family protein. (531 aa)
GJA_105Branched-chain amino acid transport system / permease component family protein; Belongs to the binding-protein-dependent transport system permease family. (329 aa)
rbsRRibose operon repressor. (348 aa)
rbsKRibokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway. (298 aa)
rbsDD-ribose pyranase; Catalyzes the interconversion of beta-pyran and beta-furan forms of D-ribose. (130 aa)
GJA_1465Hypothetical protein. (43 aa)
DSF1Mannitol dehydrogenase DSF1. (461 aa)
xylBXylulokinase. (488 aa)
GJA_1471Bacterial regulatory helix-turn-helix s, AraC family protein. (305 aa)
GJA_1472Bacterial regulatory helix-turn-helix s, AraC family protein. (319 aa)
GJA_2762DNA-binding protein. (344 aa)
GJA_2763phytanoyl-CoA dioxygenase family protein. (398 aa)
GJA_283Acetyltransferase family protein. (149 aa)
CoAPantothenate kinase. (206 aa)
GJA_285Periplasmic binding s and sugar binding domain of the LacI family protein. (333 aa)
GJA_286Branched-chain amino acid transport system / permease component family protein; Belongs to the binding-protein-dependent transport system permease family. (318 aa)
GJA_287ABC transporter family protein. (267 aa)
GJA_289Bacterial regulatory s, lacI family protein. (330 aa)
GJA_291Putative transmembrane protein. (266 aa)
GJA_293Oxidoreductase, NAD-binding Rossmann fold family protein. (329 aa)
GJA_2982Putative inner membrane protein. (264 aa)
GJA_2983Xylose isomerase-like TIM barrel family protein. (301 aa)
GJA_2984Thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein; Belongs to the TPP enzyme family. (613 aa)
GJA_2985pfkB carbohydrate kinase family protein. (634 aa)
GJA_2986ABC transporter family protein. (261 aa)
GJA_2987Branched-chain amino acid transport system / permease component family protein; Belongs to the binding-protein-dependent transport system permease family. (385 aa)
GJA_2988Periplasmic binding s and sugar binding domain of the LacI family protein. (336 aa)
GJA_2989Helix-turn-helix domain, rpiR family protein. (278 aa)
idhAInositol 2-dehydrogenase. (328 aa)
GJA_2991Oxidoreductase, NAD-binding Rossmann fold family protein. (340 aa)
GJA_2999pfkB carbohydrate kinase family protein. (308 aa)
GJA_3001N-acylglucosamine 2-epimerase. (404 aa)
ydgJUncharacterized oxidoreductase ydgJ. (345 aa)
GJA_5122Oxidoreductase, NAD-binding Rossmann fold family protein. (376 aa)
GJA_5123Xylose isomerase-like TIM barrel family protein. (351 aa)
GJA_5124Periplasmic binding s and sugar binding domain of the LacI family protein. (321 aa)
GJA_5125Branched-chain amino acid transport system / permease component family protein; Belongs to the binding-protein-dependent transport system permease family. (334 aa)
GJA_5126ABC transporter family protein. (495 aa)
GJA_5127Alanine racemase. (328 aa)
Your Current Organism:
Janthinobacterium agaricidamnosum
NCBI taxonomy Id: 1349767
Other names: J. agaricidamnosum NBRC 102515 = DSM 9628, Janthinobacterium agaricidamnosum DSM 9628, Janthinobacterium agaricidamnosum DSM 9628 = NBRC 102515, Janthinobacterium agaricidamnosum NBRC 102515, Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628
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